Commit 7d201c9d authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Adding logging

parent d530c5f7
......@@ -84,7 +84,10 @@ object VepNormalizer extends ToolCommand {
logger.debug("Wrote header to file")
normalize(reader, writer, newInfos, commandArgs.mode, commandArgs.removeCSQ)
} else writer.writeHeader(header)
} else {
logger.debug("No variants found, skipping normalize step")
writer.writeHeader(header)
}
writer.close()
logger.debug("Closed writer")
reader.close()
......
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