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Commit 26fa9924 authored by Peter van 't Hof's avatar Peter van 't Hof
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Correct imports

parent a0573985
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biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/ApplyRecalibration.scala
View file @ 26fa9924
......@@ -3,7 +3,7 @@ package nl.lumc.sasc.biopet.extensions.gatk.broad
import java.io.File
import nl.lumc.sasc.biopet.utils.config.Configurable
import org.broadinstitute.gatk.queue.extensions.gatk.{ CatVariantsGatherer, TaggedFile }
import org.broadinstitute.gatk.queue.extensions.gatk.TaggedFile
import nl.lumc.sasc.biopet.core.ScatterGatherableFunction
import nl.lumc.sasc.biopet.utils.VcfUtils
import org.broadinstitute.gatk.utils.commandline.Argument
......
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/BamGatherFunction.scala
View file @ 26fa9924
package nl.lumc.sasc.biopet.extensions.gatk.broad
import org.broadinstitute.gatk.queue.function.scattergather.GatherFunction
import org.broadinstitute.gatk.queue.function.RetryMemoryLimit
import java.io.File
import nl.lumc.sasc.biopet.core.BiopetCommandLineFunction
import nl.lumc.sasc.biopet.extensions.picard.MergeSamFiles
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biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/CatVariantsGather.scala
View file @ 26fa9924
......@@ -2,7 +2,6 @@ package nl.lumc.sasc.biopet.extensions.gatk.broad
import nl.lumc.sasc.biopet.core.BiopetCommandLineFunction
import org.broadinstitute.gatk.queue.extensions.gatk.TaggedFile
import org.broadinstitute.gatk.queue.function.RetryMemoryLimit
import org.broadinstitute.gatk.queue.function.scattergather.GatherFunction
/**
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