Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
26fa9924
Commit
26fa9924
authored
May 04, 2016
by
Peter van 't Hof
Browse files
Correct imports
parent
a0573985
Changes
3
Hide whitespace changes
Inline
Side-by-side
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/ApplyRecalibration.scala
View file @
26fa9924
...
...
@@ -3,7 +3,7 @@ package nl.lumc.sasc.biopet.extensions.gatk.broad
import
java.io.File
import
nl.lumc.sasc.biopet.utils.config.Configurable
import
org.broadinstitute.gatk.queue.extensions.gatk.
{
CatVariantsGatherer
,
TaggedFile
}
import
org.broadinstitute.gatk.queue.extensions.gatk.TaggedFile
import
nl.lumc.sasc.biopet.core.ScatterGatherableFunction
import
nl.lumc.sasc.biopet.utils.VcfUtils
import
org.broadinstitute.gatk.utils.commandline.Argument
...
...
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/BamGatherFunction.scala
View file @
26fa9924
package
nl.lumc.sasc.biopet.extensions.gatk.broad
import
org.broadinstitute.gatk.queue.function.scattergather.GatherFunction
import
org.broadinstitute.gatk.queue.function.RetryMemoryLimit
import
java.io.File
import
nl.lumc.sasc.biopet.core.BiopetCommandLineFunction
import
nl.lumc.sasc.biopet.extensions.picard.MergeSamFiles
...
...
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/CatVariantsGather.scala
View file @
26fa9924
...
...
@@ -2,7 +2,6 @@ package nl.lumc.sasc.biopet.extensions.gatk.broad
import
nl.lumc.sasc.biopet.core.BiopetCommandLineFunction
import
org.broadinstitute.gatk.queue.extensions.gatk.TaggedFile
import
org.broadinstitute.gatk.queue.function.RetryMemoryLimit
import
org.broadinstitute.gatk.queue.function.scattergather.GatherFunction
/**
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment