Commit e2c9fe3a authored by Peter van 't Hof's avatar Peter van 't Hof

Correct tests

parent 605a588e
......@@ -49,7 +49,7 @@ class Toucan(val root: Configurable) extends QScript with BiopetQScript with Sum
lazy val minScatterGenomeSize: Long = config("min_scatter_genome_size", default = 75000000)
lazy val enableScatter: Boolean = config("enable_scater", default = {
lazy val enableScatter: Boolean = config("enable_scatter", default = {
val ref = new FastaSequenceFile(referenceFasta(), true)
val refLenght = ref.getSequenceDictionary.getReferenceLength
ref.close()
......
......@@ -37,7 +37,7 @@ class ToucanTest extends TestNGSuite with Matchers {
@Test
def testBinning(): Unit = {
val pipeline = initPipeline(ToucanTest.config ++ Map("bin_size" -> 4000))
val pipeline = initPipeline(ToucanTest.config ++ Map("bin_size" -> 4000, "min_scatter_genome_size" -> 1000))
pipeline.inputVcf = new File(ToucanTest.resourcePath("/chrQ2.vcf.gz"))
pipeline.script()
......
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