Commits · 7bd889e48b91afdf353ac3d16a10fb6cb7b15c98 · Mirrors / biopet.biopet

Oct 01, 2015
- fixed regex · 7bd889e4
  Peter van 't Hof authored 9 years ago
  
  7bd889e4
- Fix deps · 7b028085
  Peter van 't Hof authored 9 years ago
  
  7b028085
- Switch to CommandLineResources · 72761225
  Peter van 't Hof authored 9 years ago
  
  72761225
- Use combine resources for pipes · 1199a39e
  Peter van 't Hof authored 9 years ago
  
  1199a39e
- Extracted resoures to trait, usable on non biopet CommandLineFunctions · e7a138d9
  Peter van 't Hof authored 9 years ago
  
  e7a138d9
Sep 30, 2015
- Removed test · 310b07ef
  Peter van 't Hof authored 9 years ago
  
  310b07ef
- Bash script to keep track of running jobs · ade862a4
  Peter van 't Hof authored 9 years ago
  
  ade862a4
Sep 29, 2015
- Switch to fifo pipes · 8ae539f7
  Peter van 't Hof authored 9 years ago
  
  8ae539f7
- Added set limits to bash script · 9230f543
  Peter van 't Hof authored 9 years ago
  
  9230f543
Sep 28, 2015
- Fix for #210 · 910074b8
  Peter van 't Hof authored 9 years ago
  
  910074b8
- Changed own vmem · adb6ffe1
  Peter van 't Hof authored 9 years ago
  
  adb6ffe1
- Adding summary stats · f42be845
  Peter van 't Hof authored 9 years ago
  
  f42be845
- Fixed resources · 6fc77a78
  Peter van 't Hof authored 9 years ago
  
  6fc77a78
- Set remote command for local execution · 3ae49381
  Peter van 't Hof authored 9 years ago
  
  3ae49381
- Aggregate threads and corememory for pipes · dd6dc7b7
  Peter van 't Hof authored 9 years ago
  
  dd6dc7b7
- Catch NullPointer from queue and convert is to null instead of an failure · bdd9ce38
  Peter van 't Hof authored 9 years ago
  
  bdd9ce38
- Moved code · c6980164
  Peter van 't Hof authored 9 years ago
  
  c6980164
Sep 27, 2015
- Hide null pointen from unit tests · beef0cec
  Peter van 't Hof authored 9 years ago
  
  beef0cec
- Fixed single-end runs · 6bad7eaf
  Peter van 't Hof authored 9 years ago
  
  6bad7eaf
- Overrider default shell from queue · 41857e5d
  Peter van 't Hof authored 9 years ago
  
  41857e5d
Sep 25, 2015
- Added deps · 5096c156
  Peter van 't Hof authored 9 years ago
  
  5096c156
- Fix fastqc dependency · 206c7f01
  Peter van 't Hof authored 9 years ago
  
  206c7f01
- Fixed QcCommand · 7a3bf3b2
  Peter van 't Hof authored 9 years ago
  
  7a3bf3b2
Sep 24, 2015
- Fix import · 36fd8269
  Peter van 't Hof authored 9 years ago
  
  36fd8269
- Added FilePipes · 04210893
  Peter van 't Hof authored 9 years ago
  
  04210893
Sep 23, 2015
- Added support to have a pipe as input file · f298fe2c
  Peter van 't Hof authored 9 years ago
  
  f298fe2c
- Remove count tests · 839b0c12
  Peter van 't Hof authored 9 years ago
  
  839b0c12
- Refactor flexiprep, more pipes are used now · c6c7c899
  Peter van 't Hof authored 9 years ago
  
  c6c7c899
- Adding a QC command · 8e950ef8
  Peter van 't Hof authored 9 years ago
  
  8e950ef8
- Remove intermediate · 2387d560
  Peter van 't Hof authored 9 years ago
  
  2387d560
- Fixed output pipeline · e40baa30
  Peter van 't Hof authored 9 years ago
  
  e40baa30
Sep 22, 2015
- Better memory handling for pipes · 2ada4499
  Peter van 't Hof authored 9 years ago
  
  2ada4499
- Remove old code · 2da7887f
  Peter van 't Hof authored 9 years ago
  
  2da7887f
- Adding classpath and memory to beforeGraph · 650352d4
  Peter van 't Hof authored 9 years ago
  
  650352d4
- Convert mapping to sortsam for pipes · a952d8c4
  Peter van 't Hof authored 9 years ago
  
  a952d8c4
- Convert pipe to SortSam again · 9a3356a5
  Peter van 't Hof authored 9 years ago
  
  9a3356a5
- Change temp files · 0c43aaf3
  Peter van 't Hof authored 9 years ago
  
  0c43aaf3
- Fix compile errors · 13689911
  Peter van 't Hof authored 9 years ago
  
  13689911
- Moved sam file · bb300878
  Peter van 't Hof authored 9 years ago
  
  bb300878
- style change · 4abe2a58
  Peter van 't Hof authored 9 years ago
  
  4abe2a58