Commits · 7b8a06ed5722e3aa796bc426466b613e5b25f22a · Mirrors / biopet.biopet

Feb 13, 2015
- Fix output dirs · d5b3661d
  Peter van 't Hof authored 10 years ago
  
  d5b3661d
- remove timestamp · 3152e5fc
  Peter van 't Hof authored 10 years ago
  
  3152e5fc
- Added test log4j.properties · 64397750
  Peter van 't Hof authored 10 years ago
  
  64397750
Feb 12, 2015
- Convert flexiprep testing to DataProvider · af04710a
  Peter van 't Hof authored 10 years ago
  
  af04710a
- Fix typos · 953e054c
  Peter van 't Hof authored 10 years ago
  
  953e054c
- Fix "/" format errors · dd6abc7e
  Peter van 't Hof authored 10 years ago
  
  dd6abc7e
- Rename afterGraph to beforeGraph · e5e03434
  Peter van 't Hof authored 10 years ago
  
  e5e03434
- Added flexiprep testing · 2a906887
  Peter van 't Hof authored 10 years ago
  
  2a906887
- Change outputDir to File · 8ca365cb
  Peter van 't Hof authored 10 years ago
  
  8ca365cb
Feb 11, 2015
- Add comment · c3de5e12
  Peter van 't Hof authored 10 years ago
  
  c3de5e12
Feb 10, 2015
- Fix format · 8a9ad332
  Peter van 't Hof authored 10 years ago
  
  8a9ad332
- Fix fastqc dry run bug · 26bc48af
  Peter van 't Hof authored 10 years ago
  
  26bc48af
- Use the correct path separator · 1047c24a
  bow authored 10 years ago
  
  1047c24a
- Fix missing path separator in Flexiprep output · 1eaad60f
  bow authored 10 years ago
  
  1eaad60f
Feb 06, 2015
- Add missing docs · b9e3a088
  bow authored 10 years ago
  
  b9e3a088
- Parse module status in Flexiprep FastQC wrapper · 9fe0e57a
  bow authored 10 years ago
  
  9fe0e57a
- Fix NullPointerException caused by Option[File] being null · c78ca1be
  bow authored 10 years ago
  
  c78ca1be
Feb 04, 2015
- Add tests for FastQC functionalities in Flexiprep · daf0a0ba
  bow authored 10 years ago
  
  daf0a0ba
- Ensure module name is not processed when parsing overrepresented sequences · 1f0dda52
  bow authored 10 years ago
  
  1f0dda52
- Fix bug caused by incorrect split regex · ba0e37f1
  bow authored 10 years ago
  
  ba0e37f1
- Strip whitespace from encoding name · 752d48da
  bow authored 10 years ago
  
  752d48da
- Refactor FastQC outputDir and dataFile to separate methods · 28d55721
  bow authored 10 years ago
  
  28d55721
Feb 03, 2015
- Use Option[File] for optional files and fix bug with adapter sequence from fastqc capture · 4a9e765c
  bow authored 10 years ago
  
  4a9e765c
- Change to option types · 71eb5183
  Peter van 't Hof authored 10 years ago
  
  71eb5183
- Use requirements check on mapping and flexiprep pipeline · a9c9dfbd
  bow authored 10 years ago
  
  a9c9dfbd
- Rename libraryId -> libId for consistency · ad0c55bc
  bow authored 10 years ago
  
  ad0c55bc
- Expose Flexiprep sampleId and libraryId back to the command line · daf3d591
  bow authored 10 years ago
  
  daf3d591
- Use def again instead of lazy vals · 1aca9cd6
  bow authored 10 years ago
  
  1aca9cd6
- Add documentation to FastQC flexiprep wrapper · 4aed5bdc
  bow authored 10 years ago
  
  4aed5bdc
- Refactor Cutadapt check in Flexiprep · abebcb0a
  bow authored 10 years ago
  
  abebcb0a
- Refactor and document adapter retrieval from FastQC · 353dc276
  bow authored 10 years ago
  
  353dc276
- Refactor FastQC encoding retrieval · 6ae2579a
  bow authored 10 years ago
  
  6ae2579a
- Refactor and document fastqc data file parsing function · 1b221835
  bow authored 10 years ago
  
  1b221835
- Style update for FastQC wrapper and object in Flexiprep · c378965a
  bow authored 10 years ago
  
  c378965a
- Update summary creation for Flexiprep FastQC · 0055d58e
  bow authored 10 years ago
  
  0055d58e
Jan 29, 2015
- Remove unused import · 131f4a6f
  bow authored 10 years ago
  
  131f4a6f
- Use sync tool and update its wrapper · 96d44ee9
  bow authored 10 years ago
  
  96d44ee9
Jan 28, 2015
- Renaming values · bbd005c3
  Peter van 't Hof authored 10 years ago
  
  bbd005c3
Jan 27, 2015
- Remove queue args from pipeline · 449202bd
  Peter van 't Hof authored 10 years ago
  
  449202bd
Jan 19, 2015
- Remove unused vars · b3ae6caf
  Peter van 't Hof authored 10 years ago
  
  b3ae6caf