Commit daf3d591 authored by bow's avatar bow
Browse files

Expose Flexiprep sampleId and libraryId back to the command line

parent bfdd3e42
......@@ -38,10 +38,14 @@ class Flexiprep(val root: Configurable) extends QScript with BiopetQScript {
/** Skip Clip fastq files */
var skipClip: Boolean = config("skip_clip", default = false)
// TODO: hide sampleId and libraryId from the command line so they do not interfere with our config values
/** Sample name */
@Argument(doc = "Sample ID", shortName = "sample", required = true)
var sampleId: String = _
/** Library name */
@Argument(doc = "Library ID", shortName = "library", required = true)
var libraryId: String = _
var paired: Boolean = (input_R2 != null)
......
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