Commits · 74d27805bcd27d99d9781dfc5d059d44214f02f0 · Mirrors / biopet.biopet

Jan 27, 2016
- fixed strandProtocol · 74d27805
  Peter van 't Hof authored 9 years ago
  
  74d27805
Jan 26, 2016
- Merge remote-tracking branch 'remotes/origin/develop' into feature-measure_modules · 94749303
  Peter van 't Hof authored 9 years ago
  
  94749303
- Fixed single exon transcripts · d9410da9
  Peter van 't Hof authored 9 years ago
  
  d9410da9
- Disabled countType by default · 6b636bb7
  Peter van 't Hof authored 9 years ago
  
  6b636bb7
Jan 25, 2016
- Fixed htseq-count · 95ebd1c9
  Peter van 't Hof authored 9 years ago
  
  95ebd1c9
- Implemented LazyCheck · 175a5f6a
  Peter van 't Hof authored 9 years ago
  
  175a5f6a
- Fixed config conversions · a43106b2
  Peter van 't Hof authored 9 years ago
  
  a43106b2
- Fixed compile warning · 413bbf93
  Peter van 't Hof authored 9 years ago
  
  413bbf93
- Added tables and heatmaps to basecounter · 9184d047
  Peter van 't Hof authored 9 years ago
  
  9184d047
- Added tables and heatmaps to summary · dd71e82b
  Peter van 't Hof authored 9 years ago
  
  dd71e82b
- Remove old code · 20fe80d7
  Peter van 't Hof authored 9 years ago
  
  20fe80d7
- Implement baseCounter in pipeline · 6d9cf7ee
  Peter van 't Hof authored 9 years ago
  
  6d9cf7ee
- Optimize imports · 4024e04f
  Peter van 't Hof authored 9 years ago
  
  4024e04f
Jan 23, 2016
- Added tool extension · 43955a2f
  Peter van 't Hof authored 9 years ago
  
  43955a2f
- Added transcript counts · 293ee7bf
  Peter van 't Hof authored 9 years ago
  
  293ee7bf
- Add documentation · 7352807d
  Peter van 't Hof authored 9 years ago
  
  7352807d
Jan 22, 2016
- Added output files · 01be4515
  Peter van 't Hof authored 9 years ago
  
  01be4515
- Added gene exon and gene intron counts · b2718337
  Peter van 't Hof authored 9 years ago
  
  b2718337
- Fixed squish · eee1c5ca
  Peter van 't Hof authored 9 years ago
  
  eee1c5ca
- Added refflat support for base counting · 32adeb5e
  Peter van 't Hof authored 9 years ago
  
  32adeb5e
- Start on basecounter · 9428f738
  Peter van 't Hof authored 9 years ago
  
  9428f738
Jan 20, 2016
- Disabled uncompilble code · dc31e3e8
  Peter van 't Hof authored 9 years ago
  
  dc31e3e8
- Move Bam2Wig to multisample mapping · 946e1e77
  Peter van 't Hof authored 9 years ago
  
  946e1e77
- Change ro preProcessBam · 4b084127
  Peter van 't Hof authored 9 years ago
  
  4b084127
- Major upgrade to gentrap class · 230ce86b
  Peter van 't Hof authored 9 years ago
  
  230ce86b
- Merge branch 'fix-260' into 'develop' · 6714a0ab
  Peter van 't Hof authored 9 years ago
  
  Fix 260 Closes #260 See merge request !314
  6714a0ab
- Added cufflinks · de64cd6b
  Peter van 't Hof authored 9 years ago
  
  de64cd6b
- Fixed typo · 31720a62
  Peter van 't Hof authored 9 years ago
  
  31720a62
- Added htseqCount job · e4d8e06c
  Peter van 't Hof authored 9 years ago
  
  e4d8e06c
- Added files to summary · af59b702
  Peter van 't Hof authored 9 years ago
  
  af59b702
- Fix bwa bug using freeVar=false · 42b5a991
  Wai Yi Leung authored 9 years ago
  
  42b5a991
- Revert "PindelVCF wrapper", does not belong to this branch · bba51033
  Wai Yi Leung authored 9 years ago
  
  This reverts commit 2b618795.
  bba51033
- PindelVCF wrapper · 2b618795
  Wai Yi Leung authored 9 years ago
  
  2b618795
- Added heatmap plot · 1d1a6256
  Peter van 't Hof authored 9 years ago
  
  1d1a6256
- Added general merging · d411daac
  Peter van 't Hof authored 9 years ago
  
  d411daac
- Move script and init to main trait · 958e6ba4
  Peter van 't Hof authored 9 years ago
  
  958e6ba4
Jan 19, 2016
- Merge branch 'fix-259' into 'develop' · 19323af6
  Wai Yi Leung authored 9 years ago
  
  Fixed error message in bamutils Fixes #259 See merge request !311
  19323af6
- Added version to varscan · a13b0d1d
  Peter van 't Hof authored 9 years ago
  
  a13b0d1d
- Fixed error message in bamutils · 3fb6b5f8
  Peter van 't Hof authored 9 years ago
  
  3fb6b5f8
- Merge branch 'feature-update-cutadapt' into 'develop' · ac55539b
  Peter van 't Hof authored 9 years ago
  
  Update Cutadapt wrapper Updated cutadapt wrapper to reflect cutadapt 1.9 and added missing options (which were already supported in 1.5 but not in extension) Closes #243 See merge request !310
  ac55539b