Commits · 6bcae6c130193396f3e9eae228ae93966713920f · Mirrors / biopet.biopet

Feb 10, 2016
- Remove duplicated file · 6bcae6c1
  Peter van 't Hof authored 9 years ago
  
  6bcae6c1
Feb 09, 2016
- Added scala docs to multisampleMapping · 78ff9834
  Peter van 't Hof authored 9 years ago
  
  78ff9834
- Fix prefix of variantcalling · 7ace0d2a
  Peter van 't Hof authored 9 years ago
  
  7ace0d2a
- Make inverse of the boolean to fix issue #272 · 0372b00e
  Wai Yi Leung authored 9 years ago
  
  0372b00e
Feb 08, 2016
- Raise memory of varscan · e16d2e05
  Peter van 't Hof authored 9 years ago
  
  e16d2e05
- Remove unused imports · 2654e5c6
  Peter van 't Hof authored 9 years ago
  
  2654e5c6
- Added extra check for forcing abolute paths for input files · 4fa85007
  Peter van 't Hof authored 9 years ago
  
  4fa85007
- fixed merge table job · 9712e1d1
  Peter van 't Hof authored 9 years ago
  
  9712e1d1
- Fix insertsize plots · 54219bcb
  Peter van 't Hof authored 9 years ago
  
  54219bcb
- Hide insertsize plot on single end runs · f069ee1e
  Peter van 't Hof authored 9 years ago
  
  f069ee1e
- Hide R2 plots when single end · a5bf52fd
  Peter van 't Hof authored 9 years ago
  
  a5bf52fd
Feb 07, 2016
- Fix order is sections · 1fe8c904
  Peter van 't Hof authored 9 years ago
  
  1fe8c904
- Always show alignment plot · 0ec8dbd0
  Peter van 't Hof authored 9 years ago
  
  0ec8dbd0
Feb 05, 2016
- Fixed merge intermediate · e553b5ab
  Peter van 't Hof authored 9 years ago
  
  e553b5ab
- Added extension for fasta files · 2b630b63
  Peter van 't Hof authored 9 years ago
  
  2b630b63
- Style fixes · 6e62a69e
  Peter van 't Hof authored 9 years ago
  
  6e62a69e
- Added testing for qiime biom to krona method · 60d0fb74
  Peter van 't Hof authored 9 years ago
  
  60d0fb74
- Added testing for kraken to krona method · 6b8b3a37
  Peter van 't Hof authored 9 years ago
  
  6b8b3a37
- Fixed tests · 768f5596
  Peter van 't Hof authored 9 years ago
  
  768f5596
- Added documentation · 2bfef3ed
  Peter van 't Hof authored 9 years ago
  
  2bfef3ed
Feb 04, 2016
- Added testing to gears pipeline · ff181760
  Peter van 't Hof authored 9 years ago
  
  ff181760
- Added gears to multi mapping · 0ecd6778
  Peter van 't Hof authored 9 years ago
  
  0ecd6778
- Added more methods to test · 95882d8e
  Peter van 't Hof authored 9 years ago
  
  95882d8e
Feb 02, 2016
- Fixed bug in Ln · 53cc2a4d
  Peter van 't Hof authored 9 years ago
  
  53cc2a4d
- Added md5 check to pipeline · f941cb35
  Peter van 't Hof authored 9 years ago
  
  f941cb35
- fixed default name for output file · 3efc0409
  Peter van 't Hof authored 9 years ago
  
  3efc0409
- Remove outputDir as output file · 3095b900
  Peter van 't Hof authored 9 years ago
  
  3095b900
- fixed output file of basecounter · 8a1dfa17
  Peter van 't Hof authored 9 years ago
  
  8a1dfa17
- Fixed summary jobs · 7eb2bf8d
  Peter van 't Hof authored 9 years ago
  
  7eb2bf8d
Feb 01, 2016
- Added test on main method · 162f02ed
  Peter van 't Hof authored 9 years ago
  
  162f02ed
- Added more testing · c7d28c03
  Peter van 't Hof authored 9 years ago
  
  c7d28c03
- Remove bed annotation · 6748aa4e
  Peter van 't Hof authored 9 years ago
  
  6748aa4e
Jan 29, 2016
- Added testing on Count classes · cc0f5341
  Peter van 't Hof authored 9 years ago
  
  cc0f5341
- Added basic tests · 03abff03
  Peter van 't Hof authored 9 years ago
  
  03abff03
- Fixed bammetrics tests · 2d566da7
  Peter van 't Hof authored 9 years ago
  
  2d566da7
- wgs and rna metrics now got config value to enable/disable them · 64134d46
  Peter van 't Hof authored 9 years ago
  
  64134d46
- Fixed units tests · 69009dc0
  Peter van 't Hof authored 9 years ago
  
  69009dc0
- switch to core rscript extension · 326a21e5
  Peter van 't Hof authored 9 years ago
  
  326a21e5
- fix code warnings · 33aa9cd8
  Peter van 't Hof authored 9 years ago
  
  33aa9cd8
- Added meta exon counts to pipeline · c294fbef
  Peter van 't Hof authored 9 years ago
  
  c294fbef