Commits · 2651a6d7085256fee6d2cc262479a527694fbde5 · Mirrors / biopet.biopet

11 Apr, 2016 6 commits
- Merge remote-tracking branch 'remotes/origin/develop' into feature-snp_test · 2651a6d7
  Peter van 't Hof authored Apr 11, 2016
  
  2651a6d7
- Added spec parsing unit test · 51f89433
  Peter van 't Hof authored Apr 11, 2016
  
  51f89433
- Added test from vcf file · 33b1aeb1
  Peter van 't Hof authored Apr 11, 2016
  
  33b1aeb1
- Added empty test · a86f9771
  Peter van 't Hof authored Apr 11, 2016
  
  a86f9771
- Fix code warnings · cfeefcd4
  Peter van 't Hof authored Apr 11, 2016
  
  cfeefcd4
- Added gens_info values · 13825363
  Peter van 't Hof authored Apr 11, 2016
  
  13825363
10 Apr, 2016 1 commit
- Merge branch 'feature-seq_error_test' into 'develop' · 180bb97e
  bow authored Apr 10, 2016
```
Added binominal test

Added this for project 168

See merge request !367
```
  180bb97e
08 Apr, 2016 23 commits
- Merge branch 'feature-confignamespace' into 'develop' · 3637e383
  Peter van 't Hof authored Apr 08, 2016
```
Feature configNamespace

See #163.  

See merge request !348
```
  3637e383
- Remove unused imports · f0e1e14f
  Peter van 't Hof authored Apr 08, 2016
  
  f0e1e14f
- Remove PL · 117c534d
  Peter van 't Hof authored Apr 08, 2016
  
  117c534d
- Change description · 99a7f2e0
  Peter van 't Hof authored Apr 08, 2016
  
  99a7f2e0
- Added error message · e32a9778
  Peter van 't Hof authored Apr 08, 2016
  
  e32a9778
- no more failing tests :-) · 7d00bf07
  Sander Bollen authored Apr 08, 2016
  
  7d00bf07
- Fixed ; in values · 8ad1aa41
  Peter van 't Hof authored Apr 08, 2016
  
  8ad1aa41
- Fixed rsid · b7bf9221
  Peter van 't Hof authored Apr 08, 2016
  
  b7bf9221
- well.. it compiles · 6e5f1478
  Sander Bollen authored Apr 08, 2016
  
  6e5f1478
- Merge branch 'develop' into feature-confignamespace · c2e8dbba
  Sander Bollen authored Apr 08, 2016
```
Conflicts:
	public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Fastqc.scala
```
  c2e8dbba
- Added a default for snptest · 318fafaa
  Peter van 't Hof authored Apr 08, 2016
  
  318fafaa
- Fixed bed dir · 62aa5420
  Peter van 't Hof authored Apr 08, 2016
  
  62aa5420
- Fixed bed dir · 5301e77b
  Peter van 't Hof authored Apr 08, 2016
  
  5301e77b
- Added job delay · 97ffa0de
  Peter van 't Hof authored Apr 08, 2016
  
  97ffa0de
- Format · 72bc5c67
  Peter van 't Hof authored Apr 08, 2016
  
  72bc5c67
- Fix command · 69e6a2cd
  Peter van 't Hof authored Apr 08, 2016
  
  69e6a2cd
- Switch to other dir for bed files · a49982ef
  Peter van 't Hof authored Apr 08, 2016
  
  a49982ef
- Write empty file when no records exist · 51468763
  Peter van 't Hof authored Apr 08, 2016
  
  51468763
- Fixed defaults · a081627f
  Peter van 't Hof authored Apr 08, 2016
  
  a081627f
- Added contig · ea7bdf42
  Peter van 't Hof authored Apr 08, 2016
  
  ea7bdf42
- Adding snptestToVcf to pipeline · cfcb5527
  Peter van 't Hof authored Apr 08, 2016
  
  cfcb5527
- Added snptest parsing · 400d1a15
  Peter van 't Hof authored Apr 08, 2016
  
  400d1a15
- Added framework for SnptestToVcf · 48edf17b
  Peter van 't Hof authored Apr 08, 2016
  
  48edf17b
07 Apr, 2016 1 commit
- Fix compile error · 6e7e0422
  Peter van 't Hof authored Apr 07, 2016
  
  6e7e0422
06 Apr, 2016 6 commits
- Added more args · 44731da1
  Peter van 't Hof authored Apr 06, 2016
  
  44731da1
- Merge branch 'fix-basecounter' into 'develop' · 6623805f
  bow authored Apr 06, 2016
```
Fix basecounter

Some small fixes

See merge request !373
```
  6623805f
- Fixed typo's · 5a7743d9
  Peter van 't Hof authored Apr 06, 2016
  
  5a7743d9
- Added more status logging · 3297f0bf
  Peter van 't Hof authored Apr 06, 2016
  
  3297f0bf
- Raise default memory · 99ba29c3
  Peter van 't Hof authored Apr 06, 2016
  
  99ba29c3
- Added bam index as depency · c2473edb
  Peter van 't Hof authored Apr 06, 2016
  
  c2473edb
05 Apr, 2016 1 commit
- Added more args · 5044b1d5
  Peter van 't Hof authored Apr 05, 2016
  
  5044b1d5
04 Apr, 2016 2 commits
- Style changes · 2759a09f
  Peter van 't Hof authored Apr 04, 2016
  
  2759a09f
- Style changes · 40de3b9b
  Peter van 't Hof authored Apr 04, 2016
  
  40de3b9b