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Commit b7bf9221 authored by Peter van 't Hof's avatar Peter van 't Hof
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Fixed rsid

parent 318fafaa
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public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/SnptestToVcf.scala
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......@@ -112,7 +112,7 @@ object SnptestToVcf extends ToolCommand {
val infoBuilder = infoKeys.foldLeft(builder) { case (a, b) => a.attribute("ST_" + b, values(headerMap(b))) }
writer.add(builder.id(rsid).make())
writer.add(builder.id(rsid.replaceAll(";", ",")).make())
counter += 1
if (counter % 10000 == 0) logger.info(s"$counter lines processed")
......
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