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Commit 8ad1aa41 authored by Peter van 't Hof's avatar Peter van 't Hof
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Fixed ; in values

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public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/SnptestToVcf.scala
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......@@ -110,7 +110,7 @@ object SnptestToVcf extends ToolCommand {
.stop(end)
.noGenotypes()
val infoBuilder = infoKeys.foldLeft(builder) { case (a, b) => a.attribute("ST_" + b, values(headerMap(b))) }
val infoBuilder = infoKeys.foldLeft(builder) { case (a, b) => a.attribute("ST_" + b, values(headerMap(b)).replaceAll(";", ",")) }
writer.add(builder.id(rsid.replaceAll(";", ",")).make())
......
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