Commits · 175a5f6a0f30baec1b94a475e829033101ada7a7 · Mirrors / biopet.biopet

Jan 25, 2016
- Implemented LazyCheck · 175a5f6a
  Peter van 't Hof authored 9 years ago
  
  175a5f6a
- Fixed config conversions · a43106b2
  Peter van 't Hof authored 9 years ago
  
  a43106b2
- Fixed compile warning · 413bbf93
  Peter van 't Hof authored 9 years ago
  
  413bbf93
- Added tables and heatmaps to basecounter · 9184d047
  Peter van 't Hof authored 9 years ago
  
  9184d047
- Added tables and heatmaps to summary · dd71e82b
  Peter van 't Hof authored 9 years ago
  
  dd71e82b
- Remove old code · 20fe80d7
  Peter van 't Hof authored 9 years ago
  
  20fe80d7
- Implement baseCounter in pipeline · 6d9cf7ee
  Peter van 't Hof authored 9 years ago
  
  6d9cf7ee
- Optimize imports · 4024e04f
  Peter van 't Hof authored 9 years ago
  
  4024e04f
Jan 23, 2016
- Added tool extension · 43955a2f
  Peter van 't Hof authored 9 years ago
  
  43955a2f
- Added transcript counts · 293ee7bf
  Peter van 't Hof authored 9 years ago
  
  293ee7bf
- Add documentation · 7352807d
  Peter van 't Hof authored 9 years ago
  
  7352807d
Jan 22, 2016
- Added output files · 01be4515
  Peter van 't Hof authored 9 years ago
  
  01be4515
- Added gene exon and gene intron counts · b2718337
  Peter van 't Hof authored 9 years ago
  
  b2718337
- Fixed squish · eee1c5ca
  Peter van 't Hof authored 9 years ago
  
  eee1c5ca
- Added refflat support for base counting · 32adeb5e
  Peter van 't Hof authored 9 years ago
  
  32adeb5e
- Start on basecounter · 9428f738
  Peter van 't Hof authored 9 years ago
  
  9428f738
Jan 20, 2016
- Disabled uncompilble code · dc31e3e8
  Peter van 't Hof authored 9 years ago
  
  dc31e3e8
- Move Bam2Wig to multisample mapping · 946e1e77
  Peter van 't Hof authored 9 years ago
  
  946e1e77
- Change ro preProcessBam · 4b084127
  Peter van 't Hof authored 9 years ago
  
  4b084127
- Major upgrade to gentrap class · 230ce86b
  Peter van 't Hof authored 9 years ago
  
  230ce86b
- Added cufflinks · de64cd6b
  Peter van 't Hof authored 9 years ago
  
  de64cd6b
- Fixed typo · 31720a62
  Peter van 't Hof authored 9 years ago
  
  31720a62
- Added htseqCount job · e4d8e06c
  Peter van 't Hof authored 9 years ago
  
  e4d8e06c
- Added files to summary · af59b702
  Peter van 't Hof authored 9 years ago
  
  af59b702
- Added heatmap plot · 1d1a6256
  Peter van 't Hof authored 9 years ago
  
  1d1a6256
- Added general merging · d411daac
  Peter van 't Hof authored 9 years ago
  
  d411daac
- Move script and init to main trait · 958e6ba4
  Peter van 't Hof authored 9 years ago
  
  958e6ba4
Jan 12, 2016
- Added annotation traits · ee87baea
  Peter van 't Hof authored 9 years ago
  
  ee87baea
- Fix spelling error in the WriteDependencies JSON output · bfc93ed3
  Wai Yi Leung authored 9 years ago
  
  bfc93ed3
- Added empty implementations · 4b63e57c
  Peter van 't Hof authored 9 years ago
  
  4b63e57c
- Style fixes · 9968c43a
  Peter van 't Hof authored 9 years ago
  
  9968c43a
- Added more fields · 012fc811
  Peter van 't Hof authored 9 years ago
  
  012fc811
- Fix metrics · b93f2642
  Peter van 't Hof authored 9 years ago
  
  b93f2642
- Fix short name · d46354a7
  Peter van 't Hof authored 9 years ago
  
  d46354a7
- Added rna · ae1b86f2
  Peter van 't Hof authored 9 years ago
  
  ae1b86f2
- Fix labels · 19a8e5d7
  Peter van 't Hof authored 9 years ago
  
  19a8e5d7
- Added rna metrics plot · dd6189e2
  Peter van 't Hof authored 9 years ago
  
  dd6189e2
- Only show wgs if executed · b9f23956
  Peter van 't Hof authored 9 years ago
  
  b9f23956
- Fix reference tag · 81d36084
  Peter van 't Hof authored 9 years ago
  
  81d36084
- Added html report to pipeline · 189a25d4
  Peter van 't Hof authored 9 years ago
  
  189a25d4