Commits · 14d93e732b8289778b58ba1a4e1c605dbe1559eb · Mirrors / biopet.biopet

02 Mar, 2015 13 commits
- Added place holders for summary · 14d93e73
  Peter van 't Hof authored Mar 02, 2015
  
  14d93e73
- Merge branch 'develop' into feature-shiva · 4dd8d4f0
  Peter van 't Hof authored Mar 02, 2015
  
  4dd8d4f0
- Added unit test to gatk part of shiva · 71264da7
  Peter van 't Hof authored Mar 02, 2015
  
  71264da7
- Added log4j to supress test output · af299a87
  Peter van 't Hof authored Mar 02, 2015
  
  af299a87
- Added unit test to do some magic · f330f2f8
  Peter van 't Hof authored Mar 02, 2015
  
  f330f2f8
- Added more tests · 68182a4a
  Peter van 't Hof authored Mar 02, 2015
  
  68182a4a
- Fix name · ac9e3325
  Peter van 't Hof authored Mar 02, 2015
  
  ac9e3325
- Adding basic unit tests · 4a71cc17
  Peter van 't Hof authored Mar 02, 2015
  
  4a71cc17
- Merge branch 'patch-mutisample_summary' into 'develop' · 1571f046
  bow authored Mar 02, 2015
```
Patch mutisample summary

See merge request !112
```
  1571f046
- Change in scala docs · ca8089a0
  Peter van 't Hof authored Mar 02, 2015
  
  ca8089a0
- Format change · 5109976c
  Peter van 't Hof authored Mar 02, 2015
  
  5109976c
- Format change · a1f5260d
  Peter van 't Hof authored Mar 02, 2015
  
  a1f5260d
- Updated comment · 725b91d5
  Peter van 't Hof authored Mar 02, 2015
  
  725b91d5
27 Feb, 2015 11 commits
- Added bcftools · 7cff2bf1
  Peter van 't Hof authored Feb 27, 2015
  
  7cff2bf1
- Add todo's · e3b3e129
  Peter van 't Hof authored Feb 27, 2015
  
  e3b3e129
- Add default function to add summarizable · 53c4ba81
  Peter van 't Hof authored Feb 27, 2015
  
  53c4ba81
- Make samples and libraries Summarizable · 21182480
  Peter van 't Hof authored Feb 27, 2015
  
  21182480
- Remove Config · 8cdbba34
  Peter van 't Hof authored Feb 27, 2015
  
  8cdbba34
- Fix multisample namePrefix · 5513ff7e
  Peter van 't Hof authored Feb 27, 2015
  
  5513ff7e
- Merge branch 'develop' into feature-shiva · c86677ba
  Peter van 't Hof authored Feb 27, 2015
  
  c86677ba
- Added summary to VcfStats · 9bfb4880
  Peter van 't Hof authored Feb 27, 2015
  
  9bfb4880
- Added gvcf mode · 5c545796
  Peter van 't Hof authored Feb 27, 2015
  
  5c545796
- Fix combine variants · f6841e2c
  Peter van 't Hof authored Feb 27, 2015
  
  f6841e2c
- Merge branch 'patch-parallel_tests' into 'develop' · 4aa6f273
  bow authored Feb 27, 2015
```
Patch parallel tests

See merge request !109
```
  4aa6f273
26 Feb, 2015 16 commits
- Fix output bam files of mapping · 77d06f6e
  Peter van 't Hof authored Feb 26, 2015
  
  77d06f6e
- Updated Executable · 73995acb
  Peter van 't Hof authored Feb 26, 2015
  
  73995acb
- Merge branch 'develop' into feature-shiva · 51f729f1
  Peter van 't Hof authored Feb 26, 2015
  
  51f729f1
- Added allele modes · 85554525
  Peter van 't Hof authored Feb 26, 2015
  
  85554525
- Adding UnifiedGenotyper · 25ee758d
  Peter van 't Hof authored Feb 26, 2015
  
  25ee758d
- Add gatk variantcalling with haplotypecaller · 3c2bd820
  Peter van 't Hof authored Feb 26, 2015
  
  3c2bd820
- Add variantcalling to summary · 05273365
  Peter van 't Hof authored Feb 26, 2015
  
  05273365
- fix format · 5d9d3661
  Peter van 't Hof authored Feb 26, 2015
  
  5d9d3661
- Added name prefixes · bedfafee
  Peter van 't Hof authored Feb 26, 2015
  
  bedfafee
- Added variantcalling · 9fe575e8
  Peter van 't Hof authored Feb 26, 2015
  
  9fe575e8
- Fix multiple bugs · d6d834e6
  Peter van 't Hof authored Feb 26, 2015
  
  d6d834e6
- fix args · 7f15bd0b
  Peter van 't Hof authored Feb 26, 2015
  
  7f15bd0b
- Add CombineVariants · 4cde9723
  Peter van 't Hof authored Feb 26, 2015
  
  4cde9723
- Disable parallel tests · be0ef827
  Peter van 't Hof authored Feb 26, 2015
  
  be0ef827
- Add more options · e4c45c85
  Peter van 't Hof authored Feb 26, 2015
  
  e4c45c85
- Added implicit List[File] · 285e2e4d
  Peter van 't Hof authored Feb 26, 2015
  
  285e2e4d