Merge branch 'develop' into feature-shiva

...ain/scala/nl/lumc/sasc/biopet/pipelines/basty/Basty.scala

...ala/nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala

...n/scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala

...scala/nl/lumc/sasc/biopet/core/summary/Summarizable.scala

...c/sasc/biopet/pipelines/MultisamplePipelineTemplate.scala

.../main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala

...n/scala/nl/lumc/sasc/biopet/pipelines/kopisu/Kopisu.scala

.../main/scala/nl/lumc/sasc/biopet/pipelines/sage/Sage.scala