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biopet.biopet
Commits
4aa6f273
Commit
4aa6f273
authored
Feb 27, 2015
by
bow
Browse files
Merge branch 'patch-parallel_tests' into 'develop'
Patch parallel tests See merge request !109
parents
42472f08
be0ef827
Changes
4
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public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/core/config/ConfigTest.scala
View file @
4aa6f273
...
...
@@ -48,7 +48,7 @@ class ConfigTest extends TestNGSuite with Matchers with ConfigUtils.ImplicitConv
Config
.
getValueFromMap
(
map
,
new
ConfigValueIndex
(
"5"
,
List
(
"1"
,
"2"
,
"3"
,
"dummy"
,
"dummy"
,
"4"
,
"5"
),
"k1"
)).
get
.
asString
shouldBe
"v1"
}
@DataProvider
(
name
=
"testGetValueFromMapProvider"
,
parallel
=
true
)
@DataProvider
(
name
=
"testGetValueFromMapProvider"
)
def
testGetValueFromMapProvider
()
=
{
Array
(
Array
(
"m1"
,
Nil
,
"k1"
,
true
,
"v2"
),
...
...
public/carp/src/test/scala/nl/lumc/sasc/biopet/pipelines/carp/CarpTest.scala
View file @
4aa6f273
...
...
@@ -28,7 +28,7 @@ class CarpTest extends TestNGSuite with Matchers {
}
}
@DataProvider
(
name
=
"carpOptions"
,
parallel
=
true
)
@DataProvider
(
name
=
"carpOptions"
)
def
carpOptions
=
{
val
bool
=
Array
(
true
,
false
)
...
...
public/flexiprep/src/test/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepTest.scala
View file @
4aa6f273
...
...
@@ -29,7 +29,7 @@ class FlexiprepTest extends TestNGSuite with Matchers {
}
}
@DataProvider
(
name
=
"flexiprepOptions"
,
parallel
=
true
)
@DataProvider
(
name
=
"flexiprepOptions"
)
def
flexiprepOptions
=
{
val
paired
=
Array
(
true
,
false
)
val
skipTrims
=
Array
(
true
,
false
)
...
...
public/mapping/src/test/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingTest.scala
View file @
4aa6f273
...
...
@@ -30,7 +30,7 @@ class MappingTest extends TestNGSuite with Matchers {
}
}
@DataProvider
(
name
=
"mappingOptions"
,
parallel
=
true
)
@DataProvider
(
name
=
"mappingOptions"
)
def
mappingOptions
=
{
val
aligners
=
Array
(
"bwa"
,
"bwa-aln"
,
"star"
,
"star-2pass"
,
"bowtie"
,
"stampy"
)
val
paired
=
Array
(
true
,
false
)
...
...
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