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biopet.biopet
Commits
5513ff7e
Commit
5513ff7e
authored
Feb 27, 2015
by
Peter van 't Hof
Browse files
Fix multisample namePrefix
parent
c86677ba
Changes
2
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protected/biopet-gatk-pipelines/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/ShivaGatk.scala
View file @
5513ff7e
...
...
@@ -15,7 +15,7 @@ class ShivaGatk(val root: Configurable) extends QScript with ShivaTrait {
override
def
makeVariantcalling
(
multisample
:
Boolean
=
false
)
:
ShivaVariantcallingTrait
=
{
if
(
multisample
)
new
ShivaVariantcallingGatk
(
qscript
)
{
override
def
namePrefix
=
"multisample
.
"
override
def
namePrefix
=
"multisample"
override
def
configName
=
"shivavariantcalling"
override
def
configPath
:
List
[
String
]
=
super
.
configPath
:::
"multisample"
::
Nil
}
...
...
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
View file @
5513ff7e
...
...
@@ -29,7 +29,7 @@ trait ShivaTrait extends MultiSampleQScript with SummaryQScript {
def
makeVariantcalling
(
multisample
:
Boolean
=
false
)
:
ShivaVariantcallingTrait
=
{
if
(
multisample
)
new
ShivaVariantcalling
(
qscript
)
{
override
def
namePrefix
=
"multisample
.
"
override
def
namePrefix
=
"multisample"
override
def
configName
=
"shivavariantcalling"
override
def
configPath
:
List
[
String
]
=
super
.
configPath
:::
"multisample"
::
Nil
}
...
...
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