Commits · 0eabe6be44a08d6adcee2b6b1c7f4035dece5293 · Mirrors / biopet.biopet

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Aug 26, 2015
- Raised memory for star · 0eabe6be
  Peter van 't Hof authored Aug 26, 2015
  
  0eabe6be
Aug 25, 2015
- Merge branch 'fix-tophat_unittests' into 'develop' · 4585be8d
  Sander Bollen authored Aug 25, 2015
  4585be8d
- Fixed tophat unittests · 3644ce72
  Peter van 't Hof authored Aug 25, 2015
  
  3644ce72
- Merge branch 'fix-aligners' into 'develop' · d3473e22
  Sander Bollen authored Aug 25, 2015
  d3473e22
- Merge branch 'fix-index_output_mergeSam' into 'develop' · 8b320e53
  Sander Bollen authored Aug 25, 2015
  8b320e53
- Adding index file as output file for queue · 9ce8c169
  Peter van 't Hof authored Aug 25, 2015
  
  9ce8c169
Aug 24, 2015
- Fixed statement · e9a3492b
  Peter van 't Hof authored Aug 24, 2015
  
  e9a3492b
- Added a check for tophat on index files · 9dca30a7
  Peter van 't Hof authored Aug 24, 2015
  
  9dca30a7
- Added auto detect on large indexes for bowtie · 27db07f0
  Peter van 't Hof authored Aug 24, 2015
  
  27db07f0
Aug 19, 2015
- Remove env value · 3b86133f
  Peter van 't Hof authored Aug 19, 2015
  
  3b86133f
- Fix star output files · 17dbf930
  Peter van 't Hof authored Aug 19, 2015
  
  17dbf930
- fixed bowtie command · 855bd500
  Peter van 't Hof authored Aug 19, 2015
  
  855bd500
- Merge branch 'feature-improve_sample_tsv' into 'develop' · 784b647f
  Sander Bollen authored Aug 19, 2015
  784b647f
- Fixed typo · 075a0e44
  Peter van 't Hof authored Aug 19, 2015
  
  075a0e44
- Fixed typo · c3c0fc09
  Peter van 't Hof authored Aug 19, 2015
  
  c3c0fc09
Aug 18, 2015
- Merge branch 'feature-fast_build' into 'develop' · 3cf48aa1
  Sander Bollen authored Aug 18, 2015
  3cf48aa1
- Changed default mode for VepNormalizer · e493a90b
  Peter van 't Hof authored Aug 18, 2015
  
  e493a90b
- Fix indexes location of bowtie · 5a13b740
  Peter van 't Hof authored Aug 18, 2015
  
  5a13b740
- Fix output file · eedeeeeb
  Peter van 't Hof authored Aug 17, 2015
  eedeeeeb
Aug 17, 2015
- Merge branch 'fix-mapping_report' into 'develop' · 1890dd26
  Sander Bollen authored Aug 17, 2015
  1890dd26
- Fix inversion · 92ae5a49
  Peter van 't Hof authored Aug 17, 2015
  
  92ae5a49
- Style fix · 5a765da5
  Peter van 't Hof authored Aug 17, 2015
  
  5a765da5
- Added reference trait for tophat · 2765ff0c
  Peter van 't Hof authored Aug 17, 2015
  2765ff0c
- Added requirements to docs · 2b694375
  Peter van 't Hof authored Aug 17, 2015
  
  2b694375
Aug 16, 2015
- Adding workaround for issue #180 · 6b9c8e37
  Peter van 't Hof authored Aug 16, 2015
  
  6b9c8e37
- Added an exeption when lines has not the same columns as the header · 4b3972ae
  Peter van 't Hof authored Aug 16, 2015
  
  4b3972ae
- Added exeption on duplicate sample/libs · cbd73126
  Peter van 't Hof authored Aug 16, 2015
  
  cbd73126
- Switched library to an Option[String] · 6645955e
  Peter van 't Hof authored Aug 16, 2015
  
  6645955e
Aug 15, 2015
- Skipping parts of report when they are skipped in the pipeline · e07267db
  Peter van 't Hof authored Aug 15, 2015
  
  e07267db
Aug 12, 2015
- Merge branch 'improve-error_message' into 'develop' · 0ae99234
  Sander Bollen authored Aug 12, 2015
  0ae99234
- Merge branch 'issue186' into 'develop' · 0bca3f1e
  Peter van 't Hof authored Aug 12, 2015
  0bca3f1e
- Review refactor · d55c2684
  Peter van 't Hof authored Aug 12, 2015
  
  d55c2684
- Added a better error handling on a missing reference. · 002dd1c3
  Peter van 't Hof authored Aug 12, 2015
  
  002dd1c3
- Added unit test for #186. Unit test passes. · 8829cb1b
  Sander Bollen authored Aug 12, 2015
  
  8829cb1b
Aug 06, 2015
- remove parallel data providers · 03d9db7b
  Peter van 't Hof authored Aug 6, 2015
  
  03d9db7b
- enable parallel data providers · 907c8ddb
  Peter van 't Hof authored Aug 6, 2015
  
  907c8ddb
- Multitreaded testing · 1c8e147d
  Peter van 't Hof authored Aug 6, 2015
  
  1c8e147d
- Merge branch 'fix-dependency' into 'develop' · 23bbd96e
  Sander Bollen authored Aug 6, 2015
  23bbd96e
- Changed dependency · a9fbdf3f
  Peter van 't Hof authored Aug 6, 2015
  
  a9fbdf3f
- VcfFilter addition for musthavegenotypes. See #186. · 1bbf15aa
  Sander Bollen authored Aug 6, 2015
  1bbf15aa