Commit e9a3492b authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed statement

parent 9dca30a7
......@@ -269,7 +269,7 @@ class Tophat(val root: Configurable) extends BiopetCommandLineFunction with Refe
if (bowtie1 && !new File(bowtie_index).getParentFile.list().toList
.filter(_.startsWith(new File(bowtie_index).getName)).exists(_.endsWith(".bt2")))
throw new IllegalArgumentException("No bowtie1 index found for tophat")
else if (new File(bowtie_index).getParentFile.list().toList
else if (!new File(bowtie_index).getParentFile.list().toList
.filter(_.startsWith(new File(bowtie_index).getName)).exists(_.endsWith(".ebwt")))
throw new IllegalArgumentException("No bowtie2 index found for tophat")
}
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment