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biopet.biopet
Commits
c3c0fc09
Commit
c3c0fc09
authored
9 years ago
by
Peter van 't Hof
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Fixed typo
parent
2b694375
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SamplesTsvToJson.scala
+2
-2
2 additions, 2 deletions
...in/scala/nl/lumc/sasc/biopet/tools/SamplesTsvToJson.scala
with
2 additions
and
2 deletions
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SamplesTsvToJson.scala
+
2
−
2
View file @
c3c0fc09
...
...
@@ -46,13 +46,13 @@ object SamplesTsvToJson extends ToolCommand {
val
header
=
lines
.
head
.
split
(
"\t"
)
val
sampleColumn
=
header
.
indexOf
(
"sample"
)
val
libraryColumn
=
header
.
indexOf
(
"library"
)
if
(
sampleColumn
==
-
1
)
throw
new
IllegalStateException
(
"
s
ample column does not exist in: "
+
inputFile
)
if
(
sampleColumn
==
-
1
)
throw
new
IllegalStateException
(
"
S
ample column does not exist in: "
+
inputFile
)
val
sampleLibCache
:
mutable.Set
[(
String
,
Option
[
String
])]
=
mutable
.
Set
()
val
librariesValues
:
List
[
Map
[
String
,
Any
]]
=
for
(
tsvLine
<-
lines
.
tail
)
yield
{
val
values
=
tsvLine
.
split
(
"\t"
)
require
(
header
.
length
==
values
.
length
,
"Number columns is not the same as the header"
)
require
(
header
.
length
==
values
.
length
,
"Number
of
columns is not the same as the header"
)
val
sample
=
values
(
sampleColumn
)
val
library
=
if
(
libraryColumn
!=
-
1
)
Some
(
values
(
libraryColumn
))
else
None
...
...
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