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Commit 226e8f1e authored by Moustakas's avatar Moustakas
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Improved documentation

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docs/tools/bedtoolscoveragetocounts.md
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...@@ -17,12 +17,13 @@ Usage: BedtoolsCoverageToCounts [options] ...@@ -17,12 +17,13 @@ Usage: BedtoolsCoverageToCounts [options]
-v | --version -v | --version
Print version Print version
-I <file> | --input <file> -I <file> | --input <file>
coverage file produced with bedtools
-o <file> | --output <file> -o <file> | --output <file>
output file name
~~~ ~~~
input: coverage file produced with bedtools input: A coverage file produced with bedtools
output: a count file with the counts from the the values inside the coverage file. Where values could be almost everything, e.g. output: A count file with the counts from the the values inside the coverage file. Where values could be almost everything, e.g.
genes, ensemblIDs etc. etc. genes, ensemblIDs etc. etc.
To run the tool: To run the tool:
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