diff --git a/docs/tools/bedtoolscoveragetocounts.md b/docs/tools/bedtoolscoveragetocounts.md index c733b818536d691dd5ea84d1b8c8081a28943688..d48af0c6ef3720da4c8cc1829d8f5f4103296dad 100644 --- a/docs/tools/bedtoolscoveragetocounts.md +++ b/docs/tools/bedtoolscoveragetocounts.md @@ -17,12 +17,13 @@ Usage: BedtoolsCoverageToCounts [options] -v | --version Print version -I <file> | --input <file> - + coverage file produced with bedtools -o <file> | --output <file> + output file name ~~~ -input: coverage file produced with bedtools -output: a count file with the counts from the the values inside the coverage file. Where values could be almost everything, e.g. +input: A coverage file produced with bedtools +output: A count file with the counts from the the values inside the coverage file. Where values could be almost everything, e.g. genes, ensemblIDs etc. etc. To run the tool: