Commit c1073fd3 authored by Moustakas's avatar Moustakas
Browse files

Created a help page for BaseCounter. It is incomplete

parent 1261f884
# BaseCounter
## Introduction
This tool will generate Base count based on a bam file and a refflat file
## Example
Help menu
~~~~
Usage: BaseCounter [options]
-l <value> | --log_level <value>
Log level
-h | --help
Print usage
-v | --version
Print version
-r <file> | --refFlat <file>
refFlat file. Mandatory
-o <directory> | --outputDir <directory>
Output directory. Mandatory
-b <file> | --bam <file>
Bam file. Mandatory
-p <prefix> | --prefix
~~~~
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