Explore projects
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Mihai Lefter / gbparser
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Sam Nooij / Jovian screener
GNU General Public License v3.0 onlyA pipeline to automatically screen the output by Jovian for the presence of species and sequences (genes) of interest, and quantify them.
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Fokkema / Ribosome profiling
Creative Commons Attribution Non Commercial Share Alike 4.0 InternationalUpdated -
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This public project contains example workflows (NB see myExperiment for more examples and examples curated by Taverna developers.)
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Martijn Vermaat / Vagrant Debian Wheezy 64 box
MIT LicenseAutomatic Debian 7 Vagrant base box building on OSX and Linux - https://github.com/dotzero/vagrant-debian-wheezy-64
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This pipeline takes paired-end fastq files, does a quick genome assembly on them (via Velvet + kmergenie), and predicts antibiotic resistance via abricate.
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