Commits · f6b12ca47c495877ba07a0971aa86e837518d8e7 · biowdl / tasks

Sep 17, 2018
- Make bamIndexPath required · 4230206a
  Peter van 't Hof authored 6 years ago
  
  4230206a
Sep 13, 2018
- WIP · 26ee393b
  ffinfo authored 6 years ago
  
  26ee393b
- Dynamic index searching · 85898c4d
  ffinfo authored 6 years ago
  
  85898c4d
- Fixed names · 783783a9
  Peter van 't Hof authored 6 years ago
  
  783783a9
Sep 10, 2018
- Switch to strucs · d557d942
  ffinfo authored 6 years ago
  
  d557d942
Aug 08, 2018
- various fixes · b71a1496
  Cats authored 6 years ago
  
  b71a1496
Aug 02, 2018
- fix somatic tasks and add supporting tasks · 0dc72531
  Cats authored 6 years ago
  
  0dc72531
Jul 24, 2018
- turn optional with default into mandatory with default · 6425926f
  Cats authored 6 years ago
  
  6425926f
Jul 23, 2018
- added stylish newlines · 3d8b32b2
  Ruben Vorderman authored 6 years ago
  
  3d8b32b2
- style fixes · 2b903b2b
  Ruben Vorderman authored 6 years ago
  
  2b903b2b
- samtools to 1.0 · 3c7c7a38
  Ruben Vorderman authored 6 years ago
  
  3c7c7a38
Jun 28, 2018
- Added mkdir step · 9ddfbe5b
  pjvan_thof authored 6 years ago
  
  9ddfbe5b
May 30, 2018
- requested changes and memory settings · fb1a2c68
  Cats authored 6 years ago
  
  fb1a2c68
May 17, 2018
- fix Merge · d4c5ec42
  Cats authored 6 years ago
  
  d4c5ec42
- fix output samtools index · 372db4ea
  Cats authored 6 years ago
  
  372db4ea
- add output to index command · 7d3590e6
  Cats authored 6 years ago
  
  7d3590e6
- call caching fixes · 8aaf9153
  Cats authored 6 years ago
  
  8aaf9153
May 14, 2018
- add runtime section for samtools view · 40852ab1
  Ruben Vorderman authored 6 years ago
  
  40852ab1
May 07, 2018
- output file should not be optional · ef2914cb
  Ruben Vorderman authored 6 years ago
  
  ef2914cb
- add samtools application · 264627ed
  Ruben Vorderman authored 6 years ago
  
  264627ed
- add input bam · 89f4ea33
  Ruben Vorderman authored 6 years ago
  
  89f4ea33
May 04, 2018
- added bwa index and samtools fastq · a5d69668
  Ruben Vorderman authored 6 years ago
  
  a5d69668
- add fastq task · b3545b27
  Ruben Vorderman authored 6 years ago
  
  b3545b27
Apr 05, 2018
- link instead of merge if one bam file · f22018df
  Cats authored 6 years ago
  
  f22018df
Mar 12, 2018
- Adding precommands · a4effb10
  Peter van 't Hof authored 7 years ago
  
  a4effb10
Mar 01, 2018
- Added markdup step · 44aeaf02
  Peter van 't Hof authored 7 years ago
  
  44aeaf02
- Fixed sep · b9ab2f02
  pjvan_thof authored 7 years ago
  
  b9ab2f02
- Adding alignment step · f91f5982
  pjvan_thof authored 7 years ago
  
  f91f5982
Jan 31, 2018
- remove pipeline specific command from samtools.wdl · 85cdcf20
  Ruben Vorderman authored 7 years ago
  
  85cdcf20
- add output · 58b232cb
  Ruben Vorderman authored 7 years ago
  
  58b232cb
- add task to get contig with most coverage · 6c2f89bb
  Ruben Vorderman authored 7 years ago
  
  6c2f89bb