Commits · f34613058333fbc3a523ef513fdc6026cdd87378 · biowdl / tasks

Nov 02, 2020
- Update lima to match isoseq3 and ccs changes. · f3461305
  JasperBoom authored 4 years ago
  
  f3461305
- Add last set of updates. · d101e77c
  JasperBoom authored 4 years ago
  
  d101e77c
- Update layout samtools.wdl. · f81a99e8
  JasperBoom authored 4 years ago
  
  f81a99e8
- Add another batch of updated tasks. · 16329034
  JasperBoom authored 4 years ago
  
  16329034
- Address travis error. · a0fb6573
  JasperBoom authored 4 years ago
  
  a0fb6573
- Add another batch of updates. · ca4fe2d9
  JasperBoom authored 4 years ago
  
  ca4fe2d9
Oct 30, 2020
- Fix a third Travis error. · 840a37d1
  JasperBoom authored 4 years ago
  
  840a37d1
- Fix second task as well. · 9f77348d
  JasperBoom authored 4 years ago
  
  9f77348d
- Try to fix Travis error. · 08d6519a
  JasperBoom authored 4 years ago
  
  08d6519a
- Edit another batch of tasks to uniform layout. · b131d926
  JasperBoom authored 4 years ago
  
  b131d926
- Update first set of tasks to uniform layout. · f4fee79b
  JasperBoom authored 4 years ago
  
  f4fee79b
Oct 28, 2020
- Merge pull request #260 from biowdl/deepvariant · a395d07a
  van den Berg authored 4 years ago
  
  Fix bugs in tasks for Deepvariant and WhatsHap
  Unverified
  
  a395d07a
- Fix bug in whatshap task · 680563fe
  van den Berg authored 4 years ago
  
  680563fe
- Update parameter meta · 05f14ce2
  van den Berg authored 4 years ago
  
  05f14ce2
- Add postprocess argument to DeepVariant task · 7c63b058
  van den Berg authored 4 years ago
  
  7c63b058
- Merge pull request #259 from biowdl/samtools · eb0eb072
  van den Berg authored 4 years ago
  
  Update parameter meta for samtools
  Unverified
  
  eb0eb072
- Update parameter meta · 61ba7355
  van den Berg authored 4 years ago
  
  61ba7355
- Merge pull request #258 from biowdl/ccs5 · 43921519
  van den Berg authored 4 years ago
  
  Update to CCS version 5
  Unverified
  
  43921519
- Update parameter meta · ccfd8433
  van den Berg authored 4 years ago
  
  ccfd8433
- Remove duplicate parameter meta · e29df66c
  van den Berg authored 4 years ago
  
  e29df66c
- Update changelog · 91020044
  van den Berg authored 4 years ago
  
  91020044
- Update to CCS version 5 · 8df9a800
  van den Berg authored 4 years ago
  
  8df9a800
Oct 27, 2020
- Merge pull request #254 from biowdl/Pacbio-variantcalling · f5a89268
  van den Berg authored 4 years ago
  
  Add various new and updated tasks developed as part of the Pacbio variantcalling pipeline
  Unverified
  
  f5a89268
- Update CHANGELOG.md · af075999
  van den Berg authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  af075999
- Remove duplicate parameter meta entry · a7445b82
  van den Berg authored 4 years ago
  
  a7445b82
- Merge branch 'Pacbio-variantcalling' of https://github.com/biowdl/tasks into Pacbio-variantcalling · a2ebd7fa
  van den Berg authored 4 years ago
  
  a2ebd7fa
- Add support for outputPrefix with or without folder · 7db21a64
  van den Berg authored 4 years ago
  
  7db21a64
- Update pbbam.wdl · a82be38c
  van den Berg authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  a82be38c
Oct 22, 2020
- Add memory to samtools Merge · 37ba60dd
  van den Berg authored 4 years ago
  
  37ba60dd
Oct 15, 2020
- Merge branch 'develop' into Pacbio-variantcalling · e6c82279
  van den Berg authored 4 years ago
  
  Unverified
  
  e6c82279
- Rename parameter meta for index · 289a42d5
  van den Berg authored 4 years ago
  
  289a42d5
- Merge pull request #252 from biowdl/bugfix · 777229b4
  van den Berg authored 4 years ago
  
  Add parameter meta for threads
  Unverified
  
  777229b4
- Remove most inputs · 3fa0f141
  van den Berg authored 4 years ago
  
  3fa0f141
Oct 13, 2020
- Merge branch 'develop' into bugfix · 6a32de90
  van den Berg authored 4 years ago
  
  Unverified
  
  6a32de90
- Merge branch 'develop' into Pacbio-variantcalling · bd62a1c4
  van den Berg authored 4 years ago
  
  Unverified
  
  bd62a1c4
Oct 12, 2020
- Merge pull request #257 from biowdl/bcftools_add_tmp · 3c6d6383
  Cedrick Agaser authored 4 years ago
  
  bcftools: add tmpDir input to specify temporary directory when sorting.
  Unverified
  
  3c6d6383
- add tmpDir to parameter_meta section · 72ad1f1b
  cagaser authored 4 years ago
  
  72ad1f1b
- add tmpDir input to specify temporary directory when sorting. · 15343889
  cagaser authored 4 years ago
  
  15343889
- Update CHANGELOG.md · 14d31182
  Jasper authored 4 years ago
  
  Unverified
  
  14d31182
Oct 09, 2020
- Merge pull request #256 from biowdl/optional-indexing · e9d123a9
  Cedrick Agaser authored 4 years ago
  
  Optional indexing
  Unverified
  
  e9d123a9