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Commit 08d6519a authored by JasperBoom's avatar JasperBoom
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Try to fix Travis error.

parent b131d926
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......@@ -112,13 +112,13 @@ task Bam2Fastq {
bamFiles=""
for bamFile in ~{sep=" " bam}
do
ln ${bamFile} .
bamFiles=${bamFiles}" $(basename ${bamFile})"
ln $bamFile .
bamFiles=$bamFiles" $(basename $bamFile)"
done
for index in ~{sep=" " bamIndex}
do
ln ${index} .
ln $index .
done
bam2fastq \
......@@ -126,7 +126,7 @@ task Bam2Fastq {
-c ~{compressionLevel} \
~{true="--split-barcodes" false="" splitByBarcode} \
~{"--seqid-prefix " + seqIdPrefix} \
${bamFiles}
$bamFiles
}
output {
......
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