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Commit 7c63b058 authored by van den Berg's avatar van den Berg
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Add postprocess argument to DeepVariant task

parent eb0eb072
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......@@ -28,6 +28,7 @@ task RunDeepVariant {
File inputBamIndex
String modelType
String outputVcf
String? postprocessVariantsExtraArgs
File? customizedModel
Int? numShards
String? outputGVcf
......@@ -51,8 +52,9 @@ task RunDeepVariant {
~{"--output_gvcf " + outputGVcf} \
~{"--customized_model " + customizedModel} \
~{"--num_shards " + numShards} \
~{"--regions} " + regions} \
~{"--regions " + regions} \
~{"--sample_name " + sampleName} \
~{"--postprocess_variants_extra_args " + postprocessVariantsExtraArgs} \
~{true="--vcf_stats_report" false="--novcf_stats_report" VCFStatsReport}
}
......
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