Commits · aca226193e23d2d06cd4c58f6b225f95973aeea6 · biowdl / tasks

Feb 10, 2020
- removed memort multiplier from picard · aca22619
  cedrick authored 5 years ago
  
  aca22619
- add scripts directory · 7823ef99
  cedrick authored 5 years ago
  
  7823ef99
Feb 07, 2020
- Merge branch 'develop' into add_sv_tasks · 83755241
  cagaser authored 5 years ago
  
  83755241
- small fix · 66793bbf
  cagaser authored 5 years ago
  
  66793bbf
- Merge branch 'add_sv_tasks' of github.com:biowdl/tasks into add_sv_tasks · 89b5f8ce
  cagaser authored 5 years ago
  
  89b5f8ce
- fix some sytax styles · 094f4a7a
  cagaser authored 5 years ago
  
  094f4a7a
- Update clever.wdl · cfab4a4f
  Cedrick Agaser authored 5 years ago
  
  Co-Authored-By: Jasper Boom <jboom@infernum.nl>
  Unverified
  
  cfab4a4f
- fix writings according to bioWDL guidelines · 2d90e2ef
  cagaser authored 5 years ago
  
  2d90e2ef
- change outputBam to ouputBAM under output parameter · 30a692a5
  cagaser authored 5 years ago
  
  30a692a5
- make dockerimages configurable · ceb49be2
  cagaser authored 5 years ago
  
  ceb49be2
Feb 06, 2020
- Merge pull request #185 from biowdl/BIOWDL-400 · c8ba763e
  Ruben Vorderman authored 5 years ago
  
  Combine reorderedGlobbedScatters and scatterRegions. Add pedigree input.
  Unverified
  
  c8ba763e
- simplify the scatter stuff · a2da269c
  Ruben Vorderman authored 5 years ago
  
  a2da269c
- update changelog · 4e27d421
  Ruben Vorderman authored 5 years ago
  
  4e27d421
- Merge remote-tracking branch 'origin/develop' into BIOWDL-400 · 3613a7e4
  Ruben Vorderman authored 5 years ago
  
  3613a7e4
- add FilterShortReadsBam · 9a3eb2b0
  cagaser authored 5 years ago
  
  9a3eb2b0
- removed output structs from manta · d66c4748
  cagaser authored 5 years ago
  
  d66c4748
- add parameter_meta · 2ba6443a
  Ruben Vorderman authored 5 years ago
  
  2ba6443a
- add pedigree to GenotypeGVCF · 9fa422f4
  Ruben Vorderman authored 5 years ago
  
  9fa422f4
- add pedigree file · f377d14e
  Ruben Vorderman authored 5 years ago
  
  f377d14e
- scatterregions always outputs ordered scatters · f25df1ae
  Ruben Vorderman authored 5 years ago
  
  f25df1ae
- Merge pull request #182 from biowdl/UMI-tools · c49b71cd
  Cats authored 5 years ago
  
  add umi-tools
  Unverified
  
  c49b71cd
- update changelog · 483882f9
  Cats authored 5 years ago
  
  483882f9
- fix lint script · 8abdaf2a
  Cats authored 5 years ago
  
  8abdaf2a
- add memory paramter_meta for umitools dedup · fecdeb7c
  Cats authored 5 years ago
  
  fecdeb7c
- update scripts submodule · 651acbe3
  Cats authored 5 years ago
  
  651acbe3
Feb 05, 2020
- removed all manta output files except for diploidSV.vcf · e6d73d17
  cagaser authored 5 years ago
  
  e6d73d17
- add bamindex in manta · a21e51b2
  cagaser authored 5 years ago
  
  a21e51b2
- add reference index in Manta · 6833651c
  cagaser authored 5 years ago
  
  6833651c
- changed --bamFile back to --normalBam in Manta tasks · 8069a59d
  cagaser authored 5 years ago
  
  8069a59d
- fixed BAM naming in mateclever command section · f68f0c8c
  cagaser authored 5 years ago
  
  f68f0c8c
- remove structs from manta task · 0a9e63b8
  cagaser authored 5 years ago
  
  0a9e63b8
- modify BAM files naming · adf32288
  cagaser authored 5 years ago
  
  adf32288
- removed structs · c3d68e11
  cagaser authored 5 years ago
  
  c3d68e11
Feb 04, 2020
- Merge remote-tracking branch 'origin/develop' into UMI-tools · 38f56c02
  Cats authored 5 years ago
  
  38f56c02
- increase umi dedup memory · e55983c0
  Cats authored 5 years ago
  
  e55983c0
- increase memory of umitools dedup · 7ca9cdc3
  Cats authored 5 years ago
  
  7ca9cdc3
Feb 03, 2020
- Merge pull request #184 from biowdl/BIOWDL-396 · 9d62a9d9
  Ruben Vorderman authored 5 years ago
  
  Changes for the GATK-variantcalling pipeline.
  Unverified
  
  9d62a9d9
- Merge branch 'develop' into BIOWDL-396 · c296af83
  Ruben Vorderman authored 5 years ago
  
  Unverified
  
  c296af83
- Merge pull request #183 from biowdl/BIOWDL-395 · 9d3d70bb
  Jasper Boom authored 5 years ago
  
  BIOWDL-395: Add Centrifuge specific Krona task
  Unverified
  
  9d3d70bb
- correct mistake · 1084b282
  Ruben Vorderman authored 5 years ago
  
  1084b282