add reference index in Manta

6833651c · cagaser · 8069a59d · 6833651c
Commit 6833651c authored 5 years ago by cagaser
--- a/manta.wdl
+++ b/manta.wdl
@@ -62,6 +62,7 @@ task Germline {
    input {
        File bamFile
        File referenceFasta
+        File referenceFastaFai
        String runDir
        File? callRegions
        File? callRegionsIndex