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Commit d66c4748 authored by cagaser's avatar cagaser
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removed output structs from manta

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with 1 addition and 13 deletions
manta.wdl
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......@@ -92,19 +92,7 @@ task Germline {
output {
File mantaVCF = runDir + "/results/variants/diploidSV.vcf.gz"
# File mantaVCFindex = runDir + "/results/variants/diploidSV.vcf.gz.tbi"
# IndexedVcfFile candidateSmallIndels = object {
# file: runDir + "/results/variants/candidateSmallIndels.vcf.gz",
# index: runDir + "/results/variants/candidateSmallIndels.vcf.gz.tbi"
# }
# IndexedVcfFile candidateSV = object {
# file: runDir + "/results/variants/candidateSV.vcf.gz",
# index: runDir + "/results/variants/candidateSV.vcf.gz.tbi"
# }
# IndexedVcfFile diploidSV = object {
# file: runDir + "/results/variants/diploidSV.vcf.gz",
# index: runDir + "/results/variants/diploidSV.vcf.gz.tbi"
# }
File mantaVCFindex = runDir + "/results/variants/diploidSV.vcf.gz.tbi"
}
runtime {
......
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