Commits · a411311e0d74045541a000176c2f172c7d0679fd · biowdl / tasks

07 Jul, 2021 3 commits
- update CI.yml · a411311e
  cagaser authored Jul 07, 2021
  
  a411311e
- Change current development version in CHANGELOG.md to stable version · ff2b1efb
  cagaser authored Jul 07, 2021
  
  ff2b1efb
- update submodule scripts · a40300a4
  cagaser authored Jul 07, 2021
  
  a40300a4
05 Jul, 2021 2 commits
- Merge pull request #283 from biowdl/rhpvorderman-patch-1 · 41e1e078
  Ruben Vorderman authored Jul 05, 2021
```
Set defaults for boolean values
```
  41e1e078
- Merge branch 'develop' into rhpvorderman-patch-1 · a2655eb2
  Ruben Vorderman authored Jul 05, 2021
  
  a2655eb2
02 Jul, 2021 2 commits
- small formatting fix · 4e0ab25e
  Cats authored Jul 02, 2021
  
  4e0ab25e
- Update spades.wdl · f3ac5431
  Ruben Vorderman authored Jul 02, 2021
```
Co-authored-by: Davy Cats <davycats.dc@gmail.com>
```
  f3ac5431
30 Jun, 2021 5 commits
- fix cpat dockerimage · 8eb01349
  Cats authored Jun 30, 2021
  
  8eb01349
- Merge pull request #285 from biowdl/update_CPAT · faa8c93f
  Cats authored Jun 30, 2021
```
Update CPAT to version 3.0.4
```
  faa8c93f
- fix mkdir in CPAT · d4d36e02
  Cats authored Jun 30, 2021
  
  d4d36e02
- Merge remote-tracking branch 'origin/develop' into update_CPAT · 8c7f9978
  Cats authored Jun 30, 2021
  
  8c7f9978
- update CPAT to 3.0.4 · 47c89884
  Cats authored Jun 30, 2021
  
  47c89884
28 Jun, 2021 3 commits
- Merge pull request #284 from biowdl/task_issue_281 · c1a647aa
  Cedrick Agaser authored Jun 28, 2021
```
Task issue 281
```
  c1a647aa
- update CHANGELOG · da28f939
  cagaser authored Jun 28, 2021
  
  da28f939
- survivor: line 47-49, change integer to string literal · 2ebde5f0
  cagaser authored Jun 28, 2021
  
  2ebde5f0
25 Jun, 2021 1 commit
- Set defaults for boolean values · 5e29a653
  Ruben Vorderman authored Jun 25, 2021
  
  5e29a653
15 Jun, 2021 3 commits
- Merge pull request #280 from biowdl/PACBIO · c210b6cf
  Jasper authored Jun 15, 2021
```
Try to adjust localization.
```
  c210b6cf
- Add directory creation to samtools fastq. · f2f7411a
  Boom authored Jun 15, 2021
  
  f2f7411a
- Revert changes to WDL file. · 235fb43f
  Boom authored Jun 15, 2021
  
  235fb43f
14 Jun, 2021 7 commits
- Try another approach. · 734c4037
  Boom authored Jun 14, 2021
  
  734c4037
- Fix array. · adee85e2
  Boom authored Jun 14, 2021
  
  adee85e2
- Test tool without localization. · adad218b
  Boom authored Jun 14, 2021
  
  adad218b
- Merge branch 'PACBIO' of github.com:biowdl/tasks into PACBIO · e034874e
  Boom authored Jun 14, 2021
  
  e034874e
- Try a different approach. · a422e529
  Boom authored Jun 14, 2021
  
  a422e529
- Merge branch 'develop' into PACBIO · e7b9b0ec
  Jasper authored Jun 14, 2021
  
  e7b9b0ec
- Try to adjust localization. · 4f879f72
  Boom authored Jun 14, 2021
  
  4f879f72
11 Jun, 2021 8 commits
- Merge pull request #277 from biowdl/runtime · d4095300
  Jasper authored Jun 11, 2021
```
fix some runtime settings
```
  d4095300
- Remove weird line. · 833ad0bf
  Boom authored Jun 11, 2021
  
  833ad0bf
- Merge. · a0218ba0
  Boom authored Jun 11, 2021
  
  a0218ba0
- Fix outputs in ccs. · 6356c481
  Boom authored Jun 11, 2021
  
  6356c481
- Merge branch 'develop' into runtime · 50216a3a
  Jasper authored Jun 11, 2021
  
  50216a3a
- Merge pull request #279 from biowdl/BIOWDL-531 · 5554189e
  Jasper authored Jun 11, 2021
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BIOWDL-531: Update tool versions.
```
  5554189e
- Update scripts. · 460d3d04
  Boom authored Jun 11, 2021
  
  460d3d04
- Fix lima output naming. · 7251bf27
  Boom authored Jun 11, 2021
  
  7251bf27
10 Jun, 2021 1 commit
- Update tool versions. · a095517d
  Boom authored Jun 10, 2021
  
  a095517d
07 Jun, 2021 2 commits

Merge pull request #278 from biowdl/quay-io · 84365831
Ruben Vorderman authored Jun 07, 2021
```
Move pacbio-merge image to quay.io
```
84365831

Move pacbio-merge image to quay.io · e7400ced

van den Berg authored Jun 07, 2021

Docker hub has started to remove unused images from free accounts, which
means that it might remove images used by this pipeline without notice.
Therefore the pipeline now exclusively uses images from quay.io or
official repositories from docker hub, which do not have this
limitation.

e7400ced

02 Jun, 2021 2 commits
- Merge branch 'develop' into runtime · e9896daa
  Cats authored Jun 02, 2021
  
  e9896daa
- fix some runtime settings · 379d0be3
  Cats authored Jun 02, 2021
  
  379d0be3
01 Jun, 2021 1 commit
- Merge pull request #276 from biowdl/memory · 8e00c99d
  Jasper authored Jun 01, 2021
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Fix memory values.
```
  8e00c99d