Commits · Bowtie · biowdl / tasks

Apr 06, 2018
- Remove unnecessary comemnt · 93a6d8fe
  Moustakas authored 6 years ago
  
  93a6d8fe
- Add --sam option to bowtie · 128dd841
  Moustakas authored 6 years ago
  
  128dd841
Mar 19, 2018
- remove sam Sort · 6fab50e0
  Moustakas authored 6 years ago
  
  6fab50e0
- Add sam to bam conversion and sorting steps · 286e2361
  Moustakas authored 6 years ago
  
  286e2361
- Add runtime CPU · 22351bdf
  Moustakas authored 6 years ago
  
  22351bdf
- Remove ${} · c589901a
  Moustakas authored 6 years ago
  
  c589901a
- Fix task according to suggestions · be0b8b55
  Moustakas authored 6 years ago
  
  be0b8b55
Mar 14, 2018
- Add task for bowtie aligner · 10ab28b5
  Moustakas authored 7 years ago
  
  10ab28b5
Mar 12, 2018
- Adding licence · 034e9ac2
  Peter van 't Hof authored 7 years ago
  
  034e9ac2
- Adding precommands · a4effb10
  Peter van 't Hof authored 7 years ago
  
  a4effb10
Mar 09, 2018
- Adding combineGVFs · ccebb5b5
  Peter van 't Hof authored 7 years ago
  
  ccebb5b5
- Adding combineGVFs · b7e531ee
  Peter van 't Hof authored 7 years ago
  
  b7e531ee
- Added genotyping step · 3dacefb3
  Peter van 't Hof authored 7 years ago
  
  3dacefb3
- Make jar path only · a2d89a91
  Peter van 't Hof authored 7 years ago
  
  a2d89a91
- Fixed argument · 93c2816f
  Peter van 't Hof authored 7 years ago
  
  93c2816f
- Fixed argument · 6663e0b0
  Peter van 't Hof authored 7 years ago
  
  6663e0b0
- Fixed command · c90ca837
  Peter van 't Hof authored 7 years ago
  
  c90ca837
- Adding haplotypecaller step · 49c6df69
  Peter van 't Hof authored 7 years ago
  
  49c6df69
- Fixing creation of directories · fa61ae46
  Peter van 't Hof authored 7 years ago
  
  fa61ae46
- Fixed if · 5ba7837c
  Peter van 't Hof authored 7 years ago
  
  5ba7837c
- Fixed if · ba792ad0
  Peter van 't Hof authored 7 years ago
  
  ba792ad0
- Fixed if · 8db73c54
  Peter van 't Hof authored 7 years ago
  
  8db73c54
- Fixed if · f5729505
  Peter van 't Hof authored 7 years ago
  
  f5729505
- Switch to bash · 4cefb9aa
  Peter van 't Hof authored 7 years ago
  
  4cefb9aa
Mar 08, 2018
- Fixed argument · e385f934
  Peter van 't Hof authored 7 years ago
  
  e385f934
- Fixed argument · 49f77ae8
  Peter van 't Hof authored 7 years ago
  
  49f77ae8
- Fixed argument · 9f5beefd
  Peter van 't Hof authored 7 years ago
  
  9f5beefd
- Fixed argument · 3d02f8d5
  Peter van 't Hof authored 7 years ago
  
  3d02f8d5
- Fixed file path · 9af24bc2
  Peter van 't Hof authored 7 years ago
  
  9af24bc2
- fixed glob · b3f3b5ce
  Peter van 't Hof authored 7 years ago
  
  b3f3b5ce
- Fixed output files of fastqc · e2c513a9
  Peter van 't Hof authored 7 years ago
  
  e2c513a9
- Added known sites · 7bfb1d6a
  Peter van 't Hof authored 7 years ago
  
  7bfb1d6a
- Fixing sort order · 34befbd7
  Peter van 't Hof authored 7 years ago
  
  34befbd7
- Fixed wrong memory settings · a62332f9
  Peter van 't Hof authored 7 years ago
  
  a62332f9
- Switch to picard markduplicates · a37bdbc6
  Peter van 't Hof authored 7 years ago
  
  a37bdbc6
- added flag · f08dd41f
  Peter van 't Hof authored 7 years ago
  
  f08dd41f
- Added bqsr · afa80b82
  Peter van 't Hof authored 7 years ago
  
  afa80b82
Mar 01, 2018
- WIP · f7bd4ab8
  Peter van 't Hof authored 7 years ago
  
  f7bd4ab8
- Adding mkdir · cdb2f578
  Peter van 't Hof authored 7 years ago
  
  cdb2f578
- Adding chunking · 7c1bee7a
  Peter van 't Hof authored 7 years ago
  
  7c1bee7a