Fixed argument

3d02f8d5 · Peter van 't Hof · 9af24bc2 · 3d02f8d5
Commit 3d02f8d5 authored 7 years ago by Peter van 't Hof
--- a/biopet.wdl
+++ b/biopet.wdl
@@ -6,7 +6,7 @@ task FastqSplitter {

    command {
    mkdir -p ${sep=' ' prefix(outputPath + "/chunk_", range(numberChunks))}
-    ${if (numberChunks > 1) then ("java -jar " + tool_jar + " -i " + inputFastq + write_lines(prefix("-o ", range(numberChunks))))
+    ${if (numberChunks > 1) then ("java -jar " + tool_jar + " -I " + inputFastq + write_lines(prefix("-o ", range(numberChunks))))
    else ("ln -sf " + inputFastq + " " + outputPath + "/chunk_0/" + basename(inputFastq))}
    }