Fixing sort order

34befbd7 · Peter van 't Hof · a62332f9 · 34befbd7
Commit 34befbd7 authored 7 years ago by Peter van 't Hof
--- a/picard.wdl
+++ b/picard.wdl
@@ -68,7 +68,6 @@ task MarkDuplicates {
      VALIDATION_STRINGENCY=SILENT \
      ${"READ_NAME_REGEX=" + read_name_regex} \
      OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 \
-      ASSUME_SORT_ORDER="queryname" \
      CLEAR_DT="false" \
      CREATE_INDEX=true \
      ADD_PG_TAG_TO_READS=false