Commits · 99b1586cf50642a211a35f7aec880796d8f7d92e · biowdl / tasks

Apr 07, 2020
- time_minutes · 99b1586c
  Cats authored 5 years ago
  
  99b1586c
Apr 06, 2020
- add time_minutes part II · 2c9810f1
  Cats authored 5 years ago
  
  2c9810f1
Apr 03, 2020
- add time_minutes part I · 843055e1
  Cats authored 5 years ago
  
  843055e1
Mar 30, 2020
- setting next version · 6a93ad83
  Ruben Vorderman authored 5 years ago
  
  6a93ad83
- stable changelog · a28a3634
  Ruben Vorderman authored 5 years ago
  
  View commits for tag v3.1.0 v3.1.0
  
  a28a3634
Mar 26, 2020
- forgotten backslash · 9febd094
  Ruben Vorderman authored 5 years ago
  
  9febd094
- Merge pull request #205 from biowdl/BIOWDL-423 · 574bb470
  Ruben Vorderman authored 5 years ago
  
  update bwa kit defaults
  574bb470
- Update bwa.wdl · 310d63da
  Ruben Vorderman authored 5 years ago
  
  Co-Authored-By: Jasper <jboom@infernum.nl>
  310d63da
- Merge branch 'develop' into BIOWDL-423 · 5c62d675
  Ruben Vorderman authored 5 years ago
  
  5c62d675
Mar 25, 2020
- Merge pull request #204 from biowdl/BIOWDL-390 · 43ffad0f
  Ruben Vorderman authored 5 years ago
  
  BIOWDL-390: Add missing output to parameter_meta.
  43ffad0f
- update parameter_meta · 8318491a
  Ruben Vorderman authored 5 years ago
  
  8318491a
- update bwa kit defaults · 2e53d9be
  Ruben Vorderman authored 5 years ago
  
  2e53d9be
- Update parameter_meta. · b3d42bae
  JasperBoom authored 5 years ago
  
  b3d42bae
- Add missing output to parameter_meta. · 8fc0fff1
  JasperBoom authored 5 years ago
  
  8fc0fff1
- Merge pull request #203 from biowdl/BIOWDL-390 · cf047f01
  Jasper authored 5 years ago
  
  BIOWDL-390: Make sure stderr log file from Refine is unique and not overwritten.
  cf047f01
- Remove outputPrefix variable from output section. · de05f71c
  JasperBoom authored 5 years ago
  
  de05f71c
- Make sure stderr log file from Refine is unique and not overwritten. · 38a36a81
  JasperBoom authored 5 years ago
  
  38a36a81
Mar 24, 2020
- Merge pull request #202 from biowdl/BIOWDL-390 · 92392999
  Jasper authored 5 years ago
  
  BIOWDL-390: Fix --min-polya-length argument syntax & add workaround…
  92392999
- Separate additions to isoseq3 into two lines. · 93c0048e
  JasperBoom authored 5 years ago
  
  93c0048e
- Update parameter_meta. · 5a72bf86
  JasperBoom authored 5 years ago
  
  5a72bf86
- Update output names. · efb8bc22
  JasperBoom authored 5 years ago
  
  efb8bc22
- Fix --min-polya-length argument syntax & add workaround for glob command not... · 56c6f23e
  JasperBoom authored 5 years ago
  
  Fix --min-polya-length argument syntax & add workaround for glob command not locating files in output directory.
  56c6f23e
Mar 23, 2020
- Merge pull request #201 from biowdl/BIOWDL-390 · c7acea6d
  Jasper authored 5 years ago
  
  BIOWDL-390: Add workaround for glob command in lima.
  c7acea6d
- Add workaround for glob command in lima. · 2a82bccc
  JasperBoom authored 5 years ago
  
  2a82bccc
Mar 20, 2020
- Update lima to correctly collect bam files. · 8c8cc282
  JasperBoom authored 5 years ago
  
  8c8cc282
- Merge pull request #200 from biowdl/BIOWDL-390 · 69d895c6
  Jasper authored 5 years ago
  
  BIOWDL-390: Add missing backslash.
  69d895c6
- Update CHANGELOG. · 5d4e3915
  JasperBoom authored 5 years ago
  
  5d4e3915
- Add missing backslash. · 006a57e0
  JasperBoom authored 5 years ago
  
  006a57e0
Mar 19, 2020
- remove unused includeHeader · 0e668512
  Ruben Vorderman authored 5 years ago
  
  0e668512
- rename outputBAM back to outputBam, remove boolean · 4154cee8
  Ruben Vorderman authored 5 years ago
  
  4154cee8
- Merge pull request #199 from biowdl/resourceRequirements · 38a6d164
  Ruben Vorderman authored 5 years ago
  
  Update resource requirements
  38a6d164
- Merge branch 'develop' into resourceRequirements · 649553d0
  Ruben Vorderman authored 5 years ago
  
  649553d0
- Merge pull request #197 from biowdl/add_UMI_separator · 68c7cbd9
  Cedrick Agaser authored 5 years ago
  
  Add umi separator
  68c7cbd9
Mar 18, 2020
- update changelog · ff263a73
  Ruben Vorderman authored 5 years ago
  
  ff263a73
- update default fastqc container since it fixes several bugs · 75172098
  Ruben Vorderman authored 5 years ago
  
  75172098
- docs for compressionLevel · e83fd172
  Ruben Vorderman authored 5 years ago
  
  e83fd172
- use more cores for cutadapt, update cutadapt version, explicitly set low compression level · 20b209f2
  Ruben Vorderman authored 5 years ago
  
  20b209f2
- more threads for BWA by default · 0cedc9aa
  Ruben Vorderman authored 5 years ago
  
  0cedc9aa
Mar 16, 2020
- Update umi-tools.wdl · 67f85bef
  Cedrick Agaser authored 5 years ago
  
  Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  67f85bef
- Update CHANGELOG.md · 3fa03e0c
  Cedrick Agaser authored 5 years ago
  
  Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  3fa03e0c