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Unverified Commit 69d895c6 authored by Jasper's avatar Jasper Committed by GitHub
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Merge pull request #200 from biowdl/BIOWDL-390

BIOWDL-390: Add missing backslash.
parents 0e668512 5d4e3915
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......@@ -10,6 +10,7 @@ that users understand how the changes affect the new version.
-->
Version 3.1.0-dev
---------------------------
+ CCS: Add missing backslash.
+ Cutadapt now explicitly calls the `--compression-level` flag with compression
level 1 to prevent cutadapt from using very high gzip compression level 6
that uses 400% more cpu time.
......
......@@ -49,7 +49,7 @@ task CCS {
--num-threads ~{cores} \
~{"--report-file " + outputPrefix + ".ccs.report.txt"} \
~{"--log-file " + outputPrefix + ".ccs.stderr.log"} \
~{subreadsFile}
~{subreadsFile} \
~{outputPrefix + ".ccs.bam"}
}
......
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