Merge pull request #204 from biowdl/BIOWDL-390

BIOWDL-390: Add missing output to parameter_meta.

CHANGELOG.md

@@ -10,6 +10,7 @@ that users understand how the changes affect the new version.
 -->
 Version 3.1.0-dev
 ---------------------------
++ Lima: Add missing output to parameter_meta.
 + Lima: Remove outputPrefix variable from output section.
 + Isoseq3: Make sure stderr log file from Refine is unique and not overwritten.
 + Isoseq3: Add workaround in Refine for glob command not locating files in output directory.

lima.wdl

@@ -145,8 +145,9 @@ task Lima {
         dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"}
 
         # outputs
-        outputFLfile: {description: "Demultiplexed reads output file."}
-        outputFLindexFile: {description: "Index of demultiplexed reads output file."}
+        outputFLfile: {description: "Demultiplexed reads output file(s)."}
+        outputFLindexFile: {description: "Index of demultiplexed reads output file(s)."}
+        outputFLxmlFile: {description: "XML file of the subreadset(s)."}
         outputSTDERRfile: {description: "Lima STDERR log file."}
         outputJSONfile: {description: "Lima JSON file."}
         outputCountsFile: {description: "Lima counts file."}