Commits · 47c89884e700c1c7ad11ba26e195d7812a6f1fac · biowdl / tasks

Jun 30, 2021
- update CPAT to 3.0.4 · 47c89884
  Cats authored 3 years ago
  
  47c89884
May 31, 2021
- fix gffcompare · 24a6f110
  Cats authored 3 years ago
  
  24a6f110
May 28, 2021
- Merge pull request #275 from biowdl/refOptional · 1a46ce88
  Cats authored 3 years ago
  
  Make referenceAnnotation optional in GffCompare and add minimumCoverage for stringtie
  Unverified
  
  1a46ce88
- Merge remote-tracking branch 'origin/develop' into refOptional · 8ed8a020
  Cats authored 3 years ago
  
  8ed8a020
- update changelog · ae1d2c02
  Cats authored 3 years ago
  
  ae1d2c02
Mar 23, 2021
- Merge pull request #274 from biowdl/addNewMultiPackageContainerWithUmiAndSamtools · cdbcd68d
  Cats authored 4 years ago
  
  Add new multi package container with umi and samtools
  Unverified
  
  cdbcd68d
- update changelog · 9c36780b
  cagaser authored 4 years ago
  
  9c36780b
Mar 22, 2021
- update dockerImage · 55818f87
  cagaser authored 4 years ago
  
  55818f87
Mar 18, 2021
- Merge pull request #273 from biowdl/addNewMultiPackageContainerWithUmiAndSamtools · f438bf4d
  Cedrick Agaser authored 4 years ago
  
  Add new multi package container with umi and samtools
  Unverified
  
  f438bf4d
- Update CHANGELOG.md · c791c96a
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Davy Cats <davycats.dc@gmail.com>
  Unverified
  
  c791c96a
- update CHANGELOG · 2a601648
  cagaser authored 4 years ago
  
  2a601648
Mar 17, 2021
- update dockerImage and re-introduce samtools indexing · 2410d0d5
  cagaser authored 4 years ago
  
  2410d0d5
- update changelog · beb54440
  cagaser authored 4 years ago
  
  beb54440
Mar 08, 2021
- Merge pull request #272 from biowdl/UmiTools_addTmpDir · 2d04addf
  Cedrick Agaser authored 4 years ago
  
  Umi tools add tmp dir
  Unverified
  
  2d04addf
- Merge remote-tracking branch 'refs/remotes/origin/UmiTools_addTmpDir' into UmiTools_addTmpDir · 051ac6aa
  cagaser authored 4 years ago
  
  051ac6aa
- remove comment · 7c8209ef
  cagaser authored 4 years ago
  
  7c8209ef
- Update umi-tools.wdl · 0f448cf2
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Davy Cats <davycats.dc@gmail.com>
  Unverified
  
  0f448cf2
- remove umitools deduped BAM index output · 3b5f1476
  cagaser authored 4 years ago
  
  3b5f1476
- update default dockerimage · f8f2b9e4
  cedrick authored 4 years ago
  
  f8f2b9e4
- add default tmpdir · 2a151b50
  cedrick authored 4 years ago
  
  2a151b50
Mar 04, 2021
- update umi-tools.wdl · 4edc1284
  cagaser authored 4 years ago
  
  4edc1284
- add tmpdir · ee6e66be
  cagaser authored 4 years ago
  
  ee6e66be
Feb 24, 2021
- Merge pull request #271 from biowdl/addDuphold · 2b158fa8
  Cedrick Agaser authored 4 years ago
  
  Add duphold
  Unverified
  
  2b158fa8
- Update bcftools.wdl · 119e2aca
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  119e2aca
- Update bcftools.wdl · 505c4fc0
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  505c4fc0
- Update CHANGELOG.md · ff4edf7a
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  ff4edf7a
- Update CHANGELOG.md · 82385790
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  82385790
Feb 22, 2021
- update CHANGELOG · 2d41a2e2
  cagaser authored 4 years ago
  
  2d41a2e2
Feb 21, 2021
- add option for bcftools view filtering · 70d7a2b3
  cagaser authored 4 years ago
  
  70d7a2b3
- add bcftools view filtering options · 5fc58ce1
  cagaser authored 4 years ago
  
  5fc58ce1
- update changelog · aef20c2a
  cagaser authored 4 years ago
  
  aef20c2a
- task: add duphold.wdl · 070a5d81
  cagaser authored 4 years ago
  
  070a5d81
Feb 19, 2021
- add index to htseq · f468bd56
  Cats authored 4 years ago
  
  f468bd56
- add -c to stringtie · a8314de9
  Cats authored 4 years ago
  
  a8314de9
Feb 04, 2021
- Merge pull request #269 from tomkuipers1402/develop · f1961510
  Cats authored 4 years ago
  
  add tasks to create files for DGE analysis
  Unverified
  
  f1961510
- change threads · a4ebccba
  tomkuipers1402 authored 4 years ago
  
  a4ebccba
Jan 08, 2021
- make reference annotation optional for gffcompare · 7988dbb2
  Cats authored 4 years ago
  
  7988dbb2
Dec 28, 2020
- annotation update · ca452303
  tomkuipers1402 authored 4 years ago
  
  ca452303
Dec 24, 2020
- style update · fcd32243
  tomkuipers1402 authored 4 years ago
  
  fcd32243
Dec 22, 2020
- add tasks to create input files for DGE analysis · f60a0181
  tomkuipers1402 authored 4 years ago
  
  f60a0181