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Created with Raphaël 2.2.017Feb16106131Jan2726252423161325Nov151410987428Oct262524211411723Sep1226Aug25232219181185229Jul2826184130Jun2322171630May8Apr18Mar987432125Feb2415141110928Jan27261918171411416Dec1514626Nov1715131211109829Oct28130Sep241723Aug20181029Jul2721201998752130Jun2928252221161514111072131May2825211920Apr1514131230Mar29252322191817118424Feb22211918169428Jan21158628Dec24221615119130Nov272625191712111096543230Oct2827262216151312987652129Sep24232116151411109742126Aug24Merge pull request #316 from biowdl/fastpadd some missing options to hmftools sage and cobaltMerge branch 'fastp' into 5.31_updateMerge remote-tracking branch 'origin/develop' into 5.31_updateMerge remote-tracking branch 'origin/develop' into fastpMerge pull request #312 from biowdl/somaticSvupdate scriptssomaticSvsomaticSvupdate changelogMerge remote-tracking branch 'origin/develop' into somaticSvupdate scriptsfastpfastpupdate changelogMerge remote-tracking branch 'origin/develop' into fastpMerge pull request #315 from biowdl/BIOWDL-604Add missing interpunctionUpdate changelog with separatorCharAllow a custom separator charadd samples option to bcftools viewfix gridss somatic filter output paths?fix output paths gridss somatic filteradd missing fasta index input to gridss GeneratePonBedpegive delly more time, specify normal ordinal in gridss GeneratePonBedpe commandupdate parameter_metaadd index to delly call inputs as welladd bcf index input for delly somatic filterincrease time for manta, add index to delly outputsMerge pull request #314 from biowdl/fix_arg_spaceUpdate CHANGELOG.mdfix_arg_spacefix_arg_spaceAdd space between flag and the value followingMerge remote-tracking branch 'origin/develop' into somaticSvadd missing paramter_metaMerge pull request #313 from biowdl/macs2_flagsUpdate CHANGELOG.mdUpdate macs2.wdlUpdate macs2.wdlUpdate macs2.wdlUpdate macs2.wdlDelete calculation for shiftsizeAddress comments from Rubenmacs2_flagsmacs2_flagsFix data type errorAdd a number of macs2 flags so we can adhere to Encode