Commits · 3dacefb37d3f66f2e4581baec12e5234a409b2fe · biowdl / tasks

Mar 09, 2018
- Added genotyping step · 3dacefb3
  Peter van 't Hof authored 7 years ago
  
  3dacefb3
- Make jar path only · a2d89a91
  Peter van 't Hof authored 7 years ago
  
  a2d89a91
- Fixed argument · 93c2816f
  Peter van 't Hof authored 7 years ago
  
  93c2816f
- Fixed argument · 6663e0b0
  Peter van 't Hof authored 7 years ago
  
  6663e0b0
- Fixed command · c90ca837
  Peter van 't Hof authored 7 years ago
  
  c90ca837
- Adding haplotypecaller step · 49c6df69
  Peter van 't Hof authored 7 years ago
  
  49c6df69
- Fixing creation of directories · fa61ae46
  Peter van 't Hof authored 7 years ago
  
  fa61ae46
- Fixed if · 5ba7837c
  Peter van 't Hof authored 7 years ago
  
  5ba7837c
- Fixed if · ba792ad0
  Peter van 't Hof authored 7 years ago
  
  ba792ad0
- Fixed if · 8db73c54
  Peter van 't Hof authored 7 years ago
  
  8db73c54
- Fixed if · f5729505
  Peter van 't Hof authored 7 years ago
  
  f5729505
- Switch to bash · 4cefb9aa
  Peter van 't Hof authored 7 years ago
  
  4cefb9aa
Mar 08, 2018
- Fixed argument · e385f934
  Peter van 't Hof authored 7 years ago
  
  e385f934
- Fixed argument · 49f77ae8
  Peter van 't Hof authored 7 years ago
  
  49f77ae8
- Fixed argument · 9f5beefd
  Peter van 't Hof authored 7 years ago
  
  9f5beefd
- Fixed argument · 3d02f8d5
  Peter van 't Hof authored 7 years ago
  
  3d02f8d5
- Fixed file path · 9af24bc2
  Peter van 't Hof authored 7 years ago
  
  9af24bc2
- fixed glob · b3f3b5ce
  Peter van 't Hof authored 7 years ago
  
  b3f3b5ce
- Fixed output files of fastqc · e2c513a9
  Peter van 't Hof authored 7 years ago
  
  e2c513a9
- Added known sites · 7bfb1d6a
  Peter van 't Hof authored 7 years ago
  
  7bfb1d6a
- Fixing sort order · 34befbd7
  Peter van 't Hof authored 7 years ago
  
  34befbd7
- Fixed wrong memory settings · a62332f9
  Peter van 't Hof authored 7 years ago
  
  a62332f9
- Switch to picard markduplicates · a37bdbc6
  Peter van 't Hof authored 7 years ago
  
  a37bdbc6
- added flag · f08dd41f
  Peter van 't Hof authored 7 years ago
  
  f08dd41f
- Added bqsr · afa80b82
  Peter van 't Hof authored 7 years ago
  
  afa80b82
Mar 01, 2018
- WIP · f7bd4ab8
  Peter van 't Hof authored 7 years ago
  
  f7bd4ab8
- Adding mkdir · cdb2f578
  Peter van 't Hof authored 7 years ago
  
  cdb2f578
- Adding chunking · 7c1bee7a
  Peter van 't Hof authored 7 years ago
  
  7c1bee7a
- Added markdup step · 44aeaf02
  Peter van 't Hof authored 7 years ago
  
  44aeaf02
- Fixed sep · b9ab2f02
  pjvan_thof authored 7 years ago
  
  b9ab2f02
- Adding alignment step · f91f5982
  pjvan_thof authored 7 years ago
  
  f91f5982
Jan 30, 2018
- Merge branch 'QC' into 'develop' · 06ef73d9
  Ruben Vorderman authored 7 years ago
  
  Changes for flexiprep QC pipeline See merge request sasc/wdl-tasks!1
  06ef73d9
- add memory param · 52c8fe03
  Ruben Vorderman authored 7 years ago
  
  52c8fe03
Jan 29, 2018
- allow capturing of report · 767bc08a
  Ruben Vorderman authored 7 years ago
  
  767bc08a
- allow gzipped files · 4860b40d
  Ruben Vorderman authored 7 years ago
  
  4860b40d
- add mkdir statement · 4f383528
  Ruben Vorderman authored 7 years ago
  
  4f383528
- getConfiguration task · dce75b05
  Ruben Vorderman authored 7 years ago
  
  dce75b05
- add preCommand · 9f1537d0
  Ruben Vorderman authored 7 years ago
  
  9f1537d0
- work with adapterlist · 6cccf353
  Ruben Vorderman authored 7 years ago
  
  6cccf353
- debugged output file · 87c555a6
  Ruben Vorderman authored 7 years ago
  
  87c555a6