Commits · 33f50aafacc8b7229c808f2771b2a36d904f39fb · biowdl / tasks

Jul 17, 2020
- Merge branch 'BIOWDL-484' of https://github.com/biowdl/tasks into BIOWDL-484 · 33f50aaf
  Ruben Vorderman authored 4 years ago
  
  33f50aaf
- Update images · fdf0e47f
  Ruben Vorderman authored 4 years ago
  
  fdf0e47f
- Merge branch 'BIOWDL-484' of https://github.com/biowdl/tasks into BIOWDL-484 · 22eef833
  Ruben Vorderman authored 4 years ago
  
  22eef833
- Update parameter_meta · 9c8b72b8
  Ruben Vorderman authored 4 years ago
  
  9c8b72b8
- Update task with newest features · 4b065c35
  Ruben Vorderman authored 4 years ago
  
  4b065c35
- Update default gatk image · 959bf985
  Ruben Vorderman authored 4 years ago
  
  959bf985
- fix view task · 631b5dfa
  Ruben Vorderman authored 4 years ago
  
  631b5dfa
- Overhaul view task · 86cd2038
  Ruben Vorderman authored 4 years ago
  
  86cd2038
- update docker image · 77b3d960
  Ruben Vorderman authored 4 years ago
  
  77b3d960
- update default images · 1308c181
  Ruben Vorderman authored 4 years ago
  
  1308c181
Jul 16, 2020
- Update picard container · 8845e4f5
  Ruben Vorderman authored 4 years ago
  
  8845e4f5
- update samtools image · 3e254fea
  Ruben Vorderman authored 4 years ago
  
  3e254fea
- update cutadapt container · 79faa7ca
  Ruben Vorderman authored 4 years ago
  
  79faa7ca
- Add parameter_meta · 4bfae066
  Ruben Vorderman authored 4 years ago
  
  4bfae066
Jul 15, 2020
- Merge pull request #230 from biowdl/SASC-1333 · 8c431e84
  Ruben Vorderman authored 4 years ago
  
  Better performance by using bam compression level 1 in star. Samtools controls to hisat.
  Unverified
  
  8c431e84
Jul 13, 2020
- Request less memory for htseq-count · 5e122542
  Ruben Vorderman authored 4 years ago
  
  5e122542
- update changelog · ebba8927
  Ruben Vorderman authored 4 years ago
  
  ebba8927
- Merge pull request #228 from biowdl/usepicard · fdab6172
  Ruben Vorderman authored 4 years ago
  
  Use htsjdk inflaters and deflaters for markduplicates
  Unverified
  
  fdab6172
Jul 09, 2020
- Update changelog · 7f293e33
  Ruben Vorderman authored 4 years ago
  
  7f293e33
- Use htsjdk inflaters and deflaters for markduplicates · 8e3788d8
  Ruben Vorderman authored 4 years ago
  
  8e3788d8
Jul 07, 2020
- update changelog · d0207b7f
  Ruben Vorderman authored 4 years ago
  
  d0207b7f
- use samtools 1.10 and hisat 2.2.0 · bef15749
  Ruben Vorderman authored 4 years ago
  
  bef15749
- Add outputBAMcompression to STAR · b5d6e71a
  Ruben Vorderman authored 4 years ago
  
  b5d6e71a
- Add samtools controls to hisat2 · 50c5d957
  Ruben Vorderman authored 4 years ago
  
  50c5d957
Jul 06, 2020
- Merge pull request #227 from biowdl/BIOWDL-475 · 7a1d7cd0
  Ruben Vorderman authored 4 years ago
  
  Update resource requirements for WGS DNA pipelines.
  Unverified
  
  7a1d7cd0
- add parameter_meta · ca368e7e
  Ruben Vorderman authored 4 years ago
  
  ca368e7e
- add forgotten M · 4f41ec07
  Ruben Vorderman authored 4 years ago
  
  4f41ec07
- update changelog · ec2bc612
  Ruben Vorderman authored 4 years ago
  
  ec2bc612
- Merge remote-tracking branch 'origin' into BIOWDL-475 · b107182c
  Ruben Vorderman authored 4 years ago
  
  b107182c
- 2GB per thread is sufficient · d9b05b58
  Ruben Vorderman authored 4 years ago
  
  d9b05b58
- use less memory on bcftools stats. · 46ea0ef3
  Ruben Vorderman authored 4 years ago
  
  46ea0ef3
- Comment on real life use for sambamba markdup · 09772e61
  Ruben Vorderman authored 4 years ago
  
  09772e61
- Only little memory is needed for gatherbqsrreports · 9749968e
  Ruben Vorderman authored 4 years ago
  
  9749968e
- Reduce flagstat memory · a18806aa
  Ruben Vorderman authored 4 years ago
  
  a18806aa
- update haplotypecaller memory · 82bd73ce
  Ruben Vorderman authored 4 years ago
  
  82bd73ce
Jul 03, 2020
- Merge pull request #226 from biowdl/BIOWDL-426 · 6cd572e7
  Jasper authored 4 years ago
  
  BIOWDL-426: Add new tasks to talon.
  Unverified
  
  6cd572e7
- Address last comment. · 68eeeb53
  JasperBoom authored 4 years ago
  
  68eeeb53
- Address comments. · cd18ce6a
  JasperBoom authored 4 years ago
  
  cd18ce6a
Jul 02, 2020
- Update threads and memories. · e921e42f
  JasperBoom authored 4 years ago
  
  e921e42f
- Merge branch 'develop' into BIOWDL-426 · 8ea286df
  Jasper authored 4 years ago
  
  Unverified
  
  8ea286df