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Commit bef15749 authored by Ruben Vorderman's avatar Ruben Vorderman
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use samtools 1.10 and hisat 2.2.0

parent b5d6e71a
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......@@ -41,8 +41,8 @@ task Hisat2 {
Int timeMinutes = 1 + ceil(size([inputR1, inputR2], "G") * 180 / threads)
# quay.io/biocontainers/mulled-v2-a97e90b3b802d1da3d6958e0867610c718cb5eb1
# is a combination of hisat2 and samtools
# hisat2=2.1.0, samtools=1.8
String dockerImage = "quay.io/biocontainers/mulled-v2-a97e90b3b802d1da3d6958e0867610c718cb5eb1:2388ff67fc407dad75774291ca5038f40cac4be0-0"
# hisat2=2.2.0, samtools=1.10
String dockerImage = "quay.io/biocontainers/mulled-v2-a97e90b3b802d1da3d6958e0867610c718cb5eb1:2880dd9d8ad0a7b221d4eacda9a818e92983128d-0"
}
String bamIndexPath = sub(outputBam, "\.bam$", ".bai")
......
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