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Commit 09772e61 authored by Ruben Vorderman's avatar Ruben Vorderman
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Comment on real life use for sambamba markdup

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......@@ -37,7 +37,7 @@ task Markdup {
Boolean removeDuplicates = false
# According to the manual sambamba markdup uses the sortbufferSize + 2 times the ioBuffer size.
# Added 1024 mb as a margin of safety
# Added 1024 mb as a margin of safety. Real life use with this setting uses 2.7 GiB.
Int memoryMb = 1024 + sortBufferSize + 2 * ioBufferSize
String dockerImage = "quay.io/biocontainers/sambamba:0.7.1--h148d290_2"
# Time minute calculation does not work well for higher number of threads.
......
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