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Created with Raphaël 2.2.04Feb28Jan21158628Dec24221615119130Nov272625191712111096543230Oct2827262216151312987652129Sep24232116151411109742126Aug2420191817141312111076529Jul2827232221201716151397632130Jun29262524232219181716151211109854228May20191815141311876130Apr282120151410987632131Mar302625242320191816131211change threadsadd extractSigPredictHRDfix some issues, add flagstatfix typosadd linx task, add more inputs to sagemake reference annotation optional for gffcomparecomment out healthchecker task and remove duplicate input in bcftools annotateMerge remote-tracking branch 'origin/develop' into sageadd note to HealthCheckerannotation updatestyle updateadd tasks to create input files for DGE analysisupdate changelogadd purple outputsadd some taksremove duphold parameterfix outputpathadd duphold.wdladd dupholdbcftools: rm memory parameter metaMerge pull request #268 from biowdl/BIOWDL-536Use github actions CIadd duphold paramater in smooveMerge pull request #266 from biowdl/BIOWDL-532Update changelog.Merge branch 'BIOWDL-532' of https://github.com/biowdl/tasks into BIOWDL-532Remove naming.Merge branch 'develop' into BIOWDL-532Update CHANGELOG.BIOWDL-532BIOWDL-532Update lima.Merge pull request #267 from biowdl/dc_fixesdowngrade stringtie and fix size call in gffreadUpload another fix.Update PacBio tasks.enable genotypingMerge pull request #265 from biowdl/BIOWDL-528add missed argument in purpletypofix outputs amber/cobaltfix some typos