Commits · 32c08100bcbf0590d7c1d69e08cdae2e3c640e99 · biowdl / tasks

May 19, 2021
- adjust runtime settings · 32c08100
  Cats authored 3 years ago
  
  32c08100
Apr 20, 2021
- add missing purple outputs, fix typo · 51e524a7
  Cats authored 3 years ago
  
  51e524a7
Apr 15, 2021
- upgrade sage version · e81de32b
  Cats authored 4 years ago
  
  e81de32b
Apr 14, 2021
- add gridss properties · a4d5102d
  Cats authored 4 years ago
  
  a4d5102d
Apr 13, 2021
- remove unused parameter_meta · bf438865
  Cats authored 4 years ago
  
  bf438865
- remove ref_genome from Linx · 0013a031
  Cats authored 4 years ago
  
  0013a031
- add germline options to purple · 22933762
  Cats authored 4 years ago
  
  22933762
Apr 12, 2021
- memory and runtime adjustements · 0862eab3
  Cats authored 4 years ago
  
  0862eab3
Mar 30, 2021
- add more memory to sambamba markdup · f83b315e
  Cats authored 4 years ago
  
  f83b315e
Mar 25, 2021
- increase memory bwa · 2aba7899
  Cats authored 4 years ago
  
  2aba7899
- update memory and timeMinutes for cutadapt and bwa · 5db3dd91
  Cats authored 4 years ago
  
  5db3dd91
Mar 23, 2021
- Merge remote-tracking branch 'origin/develop' into sage · aefc2e9d
  Cats authored 4 years ago
  
  aefc2e9d
- Merge pull request #274 from biowdl/addNewMultiPackageContainerWithUmiAndSamtools · cdbcd68d
  Cats authored 4 years ago
  
  Add new multi package container with umi and samtools
  Unverified
  
  cdbcd68d
- update changelog · 9c36780b
  cagaser authored 4 years ago
  
  9c36780b
Mar 22, 2021
- update dockerImage · 55818f87
  cagaser authored 4 years ago
  
  55818f87
Mar 19, 2021
- increase time and memory for picard collectWgsMetrics · 359456ef
  Cats authored 4 years ago
  
  359456ef
Mar 18, 2021
- Merge pull request #273 from biowdl/addNewMultiPackageContainerWithUmiAndSamtools · f438bf4d
  Cedrick Agaser authored 4 years ago
  
  Add new multi package container with umi and samtools
  Unverified
  
  f438bf4d
- Update CHANGELOG.md · c791c96a
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Davy Cats <davycats.dc@gmail.com>
  Unverified
  
  c791c96a
- update CHANGELOG · 2a601648
  cagaser authored 4 years ago
  
  2a601648
Mar 17, 2021
- update dockerImage and re-introduce samtools indexing · 2410d0d5
  cagaser authored 4 years ago
  
  2410d0d5
- update changelog · beb54440
  cagaser authored 4 years ago
  
  beb54440
Mar 11, 2021
- add array for circos confs · 13967b17
  Cats authored 4 years ago
  
  13967b17
- add circos configs to purple output · 8623c57d
  Cats authored 4 years ago
  
  8623c57d
Mar 08, 2021
- Merge pull request #272 from biowdl/UmiTools_addTmpDir · 2d04addf
  Cedrick Agaser authored 4 years ago
  
  Umi tools add tmp dir
  Unverified
  
  2d04addf
- Merge remote-tracking branch 'refs/remotes/origin/UmiTools_addTmpDir' into UmiTools_addTmpDir · 051ac6aa
  cagaser authored 4 years ago
  
  051ac6aa
- remove comment · 7c8209ef
  cagaser authored 4 years ago
  
  7c8209ef
- Update umi-tools.wdl · 0f448cf2
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Davy Cats <davycats.dc@gmail.com>
  Unverified
  
  0f448cf2
- remove umitools deduped BAM index output · 3b5f1476
  cagaser authored 4 years ago
  
  3b5f1476
- update default dockerimage · f8f2b9e4
  cedrick authored 4 years ago
  
  f8f2b9e4
- add default tmpdir · 2a151b50
  cedrick authored 4 years ago
  
  2a151b50
Mar 04, 2021
- update umi-tools.wdl · 4edc1284
  cagaser authored 4 years ago
  
  4edc1284
- add tmpdir · ee6e66be
  cagaser authored 4 years ago
  
  ee6e66be
Feb 24, 2021
- Merge pull request #271 from biowdl/addDuphold · 2b158fa8
  Cedrick Agaser authored 4 years ago
  
  Add duphold
  Unverified
  
  2b158fa8
- Update bcftools.wdl · 119e2aca
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  119e2aca
- Update bcftools.wdl · 505c4fc0
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  505c4fc0
- Update CHANGELOG.md · ff4edf7a
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  ff4edf7a
- Update CHANGELOG.md · 82385790
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  82385790
Feb 22, 2021
- update CHANGELOG · 2d41a2e2
  cagaser authored 4 years ago
  
  2d41a2e2
- fix purple output for newer version · 42f6cd2a
  Cats authored 4 years ago
  
  42f6cd2a
Feb 21, 2021
- add option for bcftools view filtering · 70d7a2b3
  cagaser authored 4 years ago
  
  70d7a2b3