update memory and timeMinutes for cutadapt and bwa

bwa.wdl

@@ -37,7 +37,7 @@ task Mem {
 
         Int threads = 4
         Int? memoryGb
-        Int timeMinutes = 1 + ceil(size([read1, read2], "G") * 500 / threads)
+        Int timeMinutes = 10 + ceil(size([read1, read2], "G") * 500 / threads)
         # Contains bwa 0.7.17 bwakit 0.7.17.dev1 and samtools 1.10.
         String dockerImage = "quay.io/biocontainers/mulled-v2-ad317f19f5881324e963f6a6d464d696a2825ab6:c59b7a73c87a9fe81737d5d628e10a3b5807f453-0"
     }
@@ -48,7 +48,7 @@ task Mem {
     Int estimatedSortThreads = if threads == 1 then 1 else 1 + ceil(threads / 4.0)
     Int totalSortThreads = select_first([sortThreads, estimatedSortThreads])
     # BWA needs slightly more memory than the size of the index files (~10%). Add a margin for safety here.
-    Int estimatedMemoryGb = 1 + ceil(size(bwaIndex.indexFiles, "G") * 1.5) + sortMemoryPerThreadGb * totalSortThreads
+    Int estimatedMemoryGb = 1 + ceil(size(bwaIndex.indexFiles, "G") * 2) + sortMemoryPerThreadGb * totalSortThreads
     
     # The bwa postalt script is out commented as soon as usePostalt = false.
     # This hack was tested with bash, dash and ash. It seems that comments in between pipes work for all of them.

cutadapt.wdl

@@ -84,7 +84,7 @@ task Cutadapt {
 
         Int cores = 4
         String memory = "~{300 + 100 * cores}M"
-        Int timeMinutes = 1 + ceil(size([read1, read2], "G")  * 12.0 / cores)
+        Int timeMinutes = 10 + ceil(size([read1, read2], "G")  * 12.0 / cores)
         String dockerImage = "quay.io/biocontainers/cutadapt:2.10--py37hf01694f_1"
     }