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Commit b963d209 authored by Cats's avatar Cats
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set interactive to true by default in multiqc

parent 29df9597
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...@@ -2,7 +2,6 @@ version 1.0 ...@@ -2,7 +2,6 @@ version 1.0
task MultiQC { task MultiQC {
input { input {
String dockerImage = "quay.io/biocontainers/multiqc:1.7--py_1"
# Use a string here so cromwell does not relocate an entire analysis directory # Use a string here so cromwell does not relocate an entire analysis directory
String analysisDirectory String analysisDirectory
Array[File] dependencies = [] # This must be used in order to run multiqc after these tasks. Array[File] dependencies = [] # This must be used in order to run multiqc after these tasks.
...@@ -29,7 +28,7 @@ task MultiQC { ...@@ -29,7 +28,7 @@ task MultiQC {
Boolean zipDataDir = false Boolean zipDataDir = false
Boolean export = false Boolean export = false
Boolean flat = false Boolean flat = false
Boolean interactive = false Boolean interactive = true
Boolean lint = false Boolean lint = false
Boolean pdf = false Boolean pdf = false
Boolean megaQCUpload = false # This must be actively enabled in my opinion. The tools default is to upload. Boolean megaQCUpload = false # This must be actively enabled in my opinion. The tools default is to upload.
...@@ -38,7 +37,10 @@ task MultiQC { ...@@ -38,7 +37,10 @@ task MultiQC {
Boolean verbose = false Boolean verbose = false
Boolean quiet = false Boolean quiet = false
Array[Boolean] finished = [] # An array of booleans that can be used to let multiqc wait on stuff. Array[Boolean] finished = [] # An array of booleans that can be used to let multiqc wait on stuff.
Int memory = 4 Int memory = 4
String dockerImage = "quay.io/biocontainers/multiqc:1.7--py_1"
} }
command { command {
......
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