diff --git a/multiqc.wdl b/multiqc.wdl index fc5d49a70609702910a3958dad729c4ca983ad99..d5a83c63cea4d65bcf13cf7e944a3fdcf89af04c 100644 --- a/multiqc.wdl +++ b/multiqc.wdl @@ -2,7 +2,6 @@ version 1.0 task MultiQC { input { - String dockerImage = "quay.io/biocontainers/multiqc:1.7--py_1" # Use a string here so cromwell does not relocate an entire analysis directory String analysisDirectory Array[File] dependencies = [] # This must be used in order to run multiqc after these tasks. @@ -29,7 +28,7 @@ task MultiQC { Boolean zipDataDir = false Boolean export = false Boolean flat = false - Boolean interactive = false + Boolean interactive = true Boolean lint = false Boolean pdf = false Boolean megaQCUpload = false # This must be actively enabled in my opinion. The tools default is to upload. @@ -38,7 +37,10 @@ task MultiQC { Boolean verbose = false Boolean quiet = false Array[Boolean] finished = [] # An array of booleans that can be used to let multiqc wait on stuff. + Int memory = 4 + + String dockerImage = "quay.io/biocontainers/multiqc:1.7--py_1" } command {