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biowdl
tasks
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b963d209
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b963d209
authored
5 years ago
by
Cats
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set interactive to true by default in multiqc
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29df9597
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multiqc.wdl
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b963d209
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@@ -2,7 +2,6 @@ version 1.0
task MultiQC {
input {
String dockerImage = "quay.io/biocontainers/multiqc:1.7--py_1"
# Use a string here so cromwell does not relocate an entire analysis directory
String analysisDirectory
Array[File] dependencies = [] # This must be used in order to run multiqc after these tasks.
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@@ -29,7 +28,7 @@ task MultiQC {
Boolean zipDataDir = false
Boolean export = false
Boolean flat = false
Boolean interactive =
fals
e
Boolean interactive =
tru
e
Boolean lint = false
Boolean pdf = false
Boolean megaQCUpload = false # This must be actively enabled in my opinion. The tools default is to upload.
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@@ -38,7 +37,10 @@ task MultiQC {
Boolean verbose = false
Boolean quiet = false
Array[Boolean] finished = [] # An array of booleans that can be used to let multiqc wait on stuff.
Int memory = 4
String dockerImage = "quay.io/biocontainers/multiqc:1.7--py_1"
}
command {
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