From b963d2097e1979a238e335bd2228602088204f0f Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Thu, 12 Sep 2019 14:51:04 +0200
Subject: [PATCH] set interactive to true by default in multiqc
---
multiqc.wdl | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/multiqc.wdl b/multiqc.wdl
index fc5d49a..d5a83c6 100644
--- a/multiqc.wdl
+++ b/multiqc.wdl
@@ -2,7 +2,6 @@ version 1.0
task MultiQC {
input {
- String dockerImage = "quay.io/biocontainers/multiqc:1.7--py_1"
# Use a string here so cromwell does not relocate an entire analysis directory
String analysisDirectory
Array[File] dependencies = [] # This must be used in order to run multiqc after these tasks.
@@ -29,7 +28,7 @@ task MultiQC {
Boolean zipDataDir = false
Boolean export = false
Boolean flat = false
- Boolean interactive = false
+ Boolean interactive = true
Boolean lint = false
Boolean pdf = false
Boolean megaQCUpload = false # This must be actively enabled in my opinion. The tools default is to upload.
@@ -38,7 +37,10 @@ task MultiQC {
Boolean verbose = false
Boolean quiet = false
Array[Boolean] finished = [] # An array of booleans that can be used to let multiqc wait on stuff.
+
Int memory = 4
+
+ String dockerImage = "quay.io/biocontainers/multiqc:1.7--py_1"
}
command {
--
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